Repositories list

• AnVIL_Collection

  Public
  📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects

  websiteanvilcontent-library+ 2gdscnedtech-software

  R

  •

  Creative Commons Attribution 4.0 International

  •1•0•1•1•Updated Dec 21, 2025Dec 21, 2025

• ITN_course_search

  Public
  A searchable table for ITN courses

  search-toolitn

  R

  •

  MIT License

  •0•0•4•4•Updated Dec 21, 2025Dec 21, 2025

• DaSL_Collection

  Public
  📚 An auto-generating library of Data Science Lab Github-based content

  websitecontent-library

  CSS

  •

  MIT License

  •0•0•0•1•Updated Dec 21, 2025Dec 21, 2025

• DataViz_Considerations

  Public
  ITN course "Considerations for Bioinformatic Data Visualization" focusing on considerations for best practices in data visualization

  data4all

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•4•2•Updated Dec 19, 2025Dec 19, 2025

• daseh_instructor_guide

  Public
  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•9•1•Updated Dec 18, 2025Dec 18, 2025

• Data_on_AnVIL

  Public
  This is a guide to all the ways to access, upload, and use data on NHGRI's AnVIL platform.

  scalable-computing

  CSS

  •

  Creative Commons Attribution 4.0 International

  •1•0•10•1•Updated Dec 18, 2025Dec 18, 2025

• Machine-Learning

  Public
  CSS

  •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

• GitHub_Automation_for_Scientists

  Public
  This course walks through why's and the how's for using automation to boost scientific software development process.

  automationcoursereproducible-research+ 10templatesactivitiesreproducibilitytroubleshootinggithub-actionsitn-courseaudience-software-developers+ 3

  CSS

  •

  Creative Commons Attribution 4.0 International

  •2•1•4•0•Updated Dec 16, 2025Dec 16, 2025

• Data-Wrangling

  Public
  UW Summer Institute in Statistics: Data Wrangling in R

  data-sciencecoursetidyverse+ 4data-wranglingr-programmingr-statsdata-science-programming

  HTML

  •

  Other

  •84•0•0•0•Updated Dec 15, 2025Dec 15, 2025

• daseh_surveys

  Public
  HTML

  •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• AnVIL_Demos

  Public
  ⏱ 30-minute demos and tutorials from our live AnVIL series

  cloudcourseresearch+ 5modulegenomicscloud-computinganvilscalable-computing

  CSS

  •

  Creative Commons Attribution 4.0 International

  •2•0•0•2•Updated Dec 10, 2025Dec 10, 2025

• DaSEH

  Public
  🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course

  data-sciencecoursetidyverse+ 9public-healthbeginnerbeginner-friendlyr-programmingniehsenvironmental-healthbeginner-programming+ 2

  HTML

  •

  MIT License

  •1•2•23•2•Updated Dec 5, 2025Dec 5, 2025

• GEMs

  Public
  💎 Materials & Portal for the Genomics Education Modules (GEMs) Program at Fred Hutch

  educationbioinformaticsgenomics+ 3entry-levelentry-level-bioinformaticsdata4all

  TeX

  •

  MIT License

  •0•0•60•1•Updated Dec 4, 2025Dec 4, 2025

• gems_surveys

  Public
  💎 A collection of surveys for GEMs

  R

  •0•0•0•0•Updated Dec 2, 2025Dec 2, 2025

• Proactive_Data_Management_and_Sharing

  Public
  Data management and sharing best practices for biomedical data handling folks

  securityprivacycourse+ 14reproducible-researchreproducible-sciencedata-managementreproducibilityhipaadata-sharingitn-course+ 7

  TeX

  •

  Creative Commons Attribution 4.0 International

  •0•0•1•0•Updated Dec 1, 2025Dec 1, 2025

• DataViz_Practice

  Public
  ITN course "Cancer Informatics Data Visualization in Practice" focusing on practicing best practices in data visualization

  data4all

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•4•2•Updated Dec 1, 2025Dec 1, 2025

• Choosing_Genomics_Tools

  Public
  Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.

  coursedata-processinggenomic-data+ 7data-interpretationitn-courseaudience-researcherscategory-fundamentals-tools-resourcesresources-and-toolslaunched-aug2023data4all

  TeX

  •

  Creative Commons Attribution 4.0 International

  •8•16•31•1•Updated Dec 1, 2025Dec 1, 2025

• Containers_for_Scientists

  Public
  This course covers how to use containers for scientific software development. Scientific software benefits from the concepts of continuous integration (CI) and continuous deployment (CD). Containers play a critical role in CI/CD by providing a consistent, portable, and isolated environment for building, testing, and deploying software.

  dockercoursereproducible-research+ 9containersci-cdsoftwarereproducibilityitn-courseaudience-software-developerscategory-software-dev+ 2

  CSS

  •

  Creative Commons Attribution 4.0 International

  •2•1•3•1•Updated Dec 1, 2025Dec 1, 2025

• Intermediate_R

  Public
  The course continues building programming fundamentals in R programming and data analysis. You will learn how to make use of complex data structures, use custom functions built by other R users, creating your own functions, and how to iterate repeated tasks that scales naturally.

  hutch-coursedata-science-programming

  JavaScript

  •

  Creative Commons Attribution 4.0 International

  •0•1•4•1•Updated Dec 1, 2025Dec 1, 2025

• bench_to_bytes

  Public
  A guide for wet bench researchers about why considering computational and data science skills can be useful for all types of scientific work.

  data4all

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•5•5•Updated Dec 1, 2025Dec 1, 2025

• reproducibility_capstone

  Public
  A capstone course for the ITN Reproducibility Series with hands-on activities

  dockerreproducible-researchreproducibility+ 10workflow-automationcapstone-projectgithub-secretsgithub-actionsitn-courseaudience-researchersaudience-software-developers+ 3

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•3•0•Updated Dec 1, 2025Dec 1, 2025

• SOTA2024_ReportOut

  Public
  Materials associated with the Report Out for the State of the AnVIL 2024

  HTML

  •

  MIT License

  •0•1•1•0•Updated Nov 21, 2025Nov 21, 2025

• daseh_quizzes

  Public
  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•5•1•Updated Nov 19, 2025Nov 19, 2025

• Intro_to_R

  Public
  The course covers fundamentals of R, a high-level programming language, and use it to wrangle data for analysis and visualization. The programming skills you will learn are transferable to learn more about R independently and other high-level languages such as Python.

  hutch-coursedata-science-programming

  HTML

  •

  Creative Commons Attribution 4.0 International

  •0•1•6•1•Updated Nov 13, 2025Nov 13, 2025

• intro_to_sql

  Public
  Intro to SQL Course for Fred Hutch

  data-science-programming

  HTML

  •1•7•0•0•Updated Nov 13, 2025Nov 13, 2025

• AnVIL_Outreach_Dashboard

  Public
  incomplete

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•2•0•Updated Nov 12, 2025Nov 12, 2025

• GDSCN_BioDIGS_Soil

  Public
  This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration and visualization of the soil characteristics data using R.

  coursemoduleanvil+ 3gdscnbiodigsdata4all

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•6•1•Updated Nov 12, 2025Nov 12, 2025

• GDSCN_BioDIGS_Book

  Public
  Getting started guide for using BioDIGS data in the classroom. Includes general information about BioDIGS.

  tutorialcourseanvil+ 4r-programminggdscnbiodigsdata4all

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•1•Updated Nov 12, 2025Nov 12, 2025

• GDSCN_BioDIGS_AMR

  Public
  This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy.

  coursemodulegdscn+ 2biodigsdata4all

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•3•1•Updated Nov 12, 2025Nov 12, 2025

• AnVIL_Poll_2024

  Public
  A summary of our findings from the 2024 State of the AnVIL user poll.

  websiteanvil2024+ 2state-of-the-anviluser-poll

  HTML

  •

  MIT License

  •0•0•4•2•Updated Nov 10, 2025Nov 10, 2025