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@flyconnectome Drosophila Connectomics group

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    33 repositories

    • bigclust2

      Public
      Version 2 of bigclust
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 1, 2026Apr 1, 2026

    • dvid_tools

      Public
      Python tools to query a DVID server
      Python
      •
      GNU General Public License v3.0
      •1•0•2•1•Updated Mar 31, 2026Mar 31, 2026

    • bancr

      Public
      An R package for querying data in the BANC dataset
      R
      •
      GNU General Public License v3.0
      •2•4•1•0•Updated Mar 30, 2026Mar 30, 2026

    • aedes

      Public
      Programmatic access in R to in progress Aedes aegypti whole brain connectome
      R
      •0•1•0•1•Updated Mar 28, 2026Mar 28, 2026

    • 2025malecns

      Public
      Supplemental data for Berg et al. (2025)
      Jupyter Notebook
      •0•2•0•2•Updated Mar 3, 2026Mar 3, 2026

    • crantr

      Public
      R Client Access to Clonal Raider ANT (CRANT) Datasets
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 2, 2026Mar 2, 2026

    • coding-club

      Public
      File sharing for the tracers' R club
      Jupyter Notebook
      •2•6•0•0•Updated Feb 12, 2026Feb 12, 2026

    • transform_service

      Public
      Small web service to transform fly data
      Python
      •2•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • cocoa

      Public
      Comparative Connectomics for Python
      clusteringneuronsneurobiology
      clusteringneuronsneurobiologyconnectomicscelltypes
      Python
      •
      GNU General Public License v3.0
      •2•8•1•0•Updated Jan 9, 2026Jan 9, 2026

    • imagereg_workshop

      Public
      Notebooks for the image registration workshop
      Jupyter Notebook
      •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • bigclust

      Public
      Tools to visualize and annotate big clusterings
      Python
      •
      GNU General Public License v3.0
      •2•4•1•0•Updated Oct 22, 2025Oct 22, 2025

    • flywire_annotations

      Public
      Annotations for the FlyWire dataset.
      Jupyter Notebook
      •2•40•0•0•Updated Oct 14, 2025Oct 14, 2025

    • 2023neckconnective

      Public
      Analysis to support the Neck Connective paper combining FAFB, FANC and MANC neck connective neurons
      2•1•0•1•Updated Sep 5, 2025Sep 5, 2025

    • nblast-scoremats

      Public
      Collection of scoring matrices for NBLAST
      morphologysimilarityneuron
      morphologysimilarityneuronscoresnblast
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • 2024crant

      Public
      R
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • ol_annotations

      Public
      Annotations for Drosophila Optic Lobe neurons linking the FAFB-FlyWire and Male CNS Optic Lobe datasets
      R
      •0•2•0•0•Updated Feb 19, 2025Feb 19, 2025

    • fancr

      Public
      Support Acccess to the Female Adult Nerve Cord (FANC) Dataset
      rneurosciencedrosophila
      rneurosciencedrosophilaneuroanatomydrosophila-brainsnatverse
      R
      •
      GNU General Public License v3.0
      •2•2•1•1•Updated Sep 4, 2024Sep 4, 2024

    • hi-mc-examples

      Public
      Data & code for the HI-MC project
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 15, 2024Jun 15, 2024

    • hemibrain_olf_data

      Public
      Summary data on identified FIB hemibrain neurons including olfactory PNs
      R
      •
      MIT License
      •0•2•6•0•Updated Dec 21, 2022Dec 21, 2022

    • tools

      Public
      Overview of neuroscience tools developed in the Fly Connectomics group (University of Cambridge) and the Jefferis lab (MRC-LMB)
      pythonrtools
      pythonrtoolsneurosciencemorphometricsneuroanatomy
      0•4•0•0•Updated May 25, 2022May 25, 2022

    • 2020hemibrain_examples

      Public
      Code examples for Schlegel, Bates et al. (2020)
      GNU General Public License v3.0
      •4•4•0•0•Updated Nov 21, 2021Nov 21, 2021

    • ALPN_crossmatching

      Public
      Data and code snippets for cross-matching olfactory PNs between FAFB (left + right) and hemibrain
      Jupyter Notebook
      •0•1•1•0•Updated Mar 9, 2021Mar 9, 2021

    • hnf

      Public
      Documentation for the hierarchical neuron format
      dataskeletonstorage
      dataskeletonstorageannotationsmeshhdf5neuronsdotprops
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 15, 2021Feb 15, 2021

    • flyconnectome

      Public
      Profile repository
      0•2•0•0•Updated Jul 13, 2020Jul 13, 2020

    • CloudVolumeServer

      Public
      Flask application to serve data via CloudVolume
      Python
      •
      BSD 2-Clause "Simplified" License
      •3•2•0•0•Updated May 21, 2020May 21, 2020

    • tracerutils

      Public
      R tools for EM tracers
      neuroscienceconnectomicsneuroanatomy-toolbox
      neuroscienceconnectomicsneuroanatomy-toolbox
      R
      •
      GNU General Public License v3.0
      •1•1•9•0•Updated Apr 20, 2020Apr 20, 2020

    • neuprint-python

      Public
      Python client utilties for interacting with the neuPrint connectome analysis service
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•0•0•0•Updated Jan 20, 2020Jan 20, 2020

    • catbot

      Public
      Slack bot to interface with CATMAID server, NBLAST and Zotero
      Python
      •
      GNU General Public License v3.0
      •1•5•11•0•Updated Dec 16, 2019Dec 16, 2019

    • fafbseg-py-media

      Public
      Repository for fafbseg-py media
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 22, 2019Sep 22, 2019

    • Install_instructions

      Public
      Repo for install instructions for various software and various machine types.
      0•0•0•0•Updated May 11, 2019May 11, 2019
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