Repositories list

• research-software-etl

  Public
  Automated pipeline for extracting, normalizing, and integrating software metadata from diverse sources

  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

• trimal

  Public
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

  trimmingmultiple-sequence-alignmentbioinformatics-tool

  C++

  •

  GNU General Public License v3.0

  •47•248•32•4•Updated Feb 11, 2026Feb 11, 2026

• openVRE-core-dev

  Public
  Open Virtual Research Environment development version

  vre

  JavaScript

  •1•0•1•2•Updated Feb 10, 2026Feb 10, 2026

• treecript

  Public
  A set of python scripts to monitor, collect, and visualize metrics of a given Linux process or a give command line

  steerselixir-steers

  Python

  •

  GNU General Public License v3.0

  •14•5•7•0•Updated Feb 10, 2026Feb 10, 2026

• tessap

  Public
  TESSAP: A docker shim which submits commands to a GA4GH TES service

  esg

  Python

  •

  Apache License 2.0

  •0•0•0•3•Updated Feb 9, 2026Feb 9, 2026

• SEED-ALS

  Public
  Web portal presenting results and visualizations from the multi-omics analyses performed within the SEED-ALS project.

  TypeScript

  •

  GNU Affero General Public License v3.0

  •3•0•0•0•Updated Feb 6, 2026Feb 6, 2026

• openEBench-nuxt

  Public
  Vue Client for the OpenEBench Micro Frontends

  openebench

  JavaScript

  •

  Apache License 2.0

  •2•2•5•12•Updated Feb 4, 2026Feb 4, 2026

• ENTRUST_TRE_Requirements_Repository

  Public
  ENTRUST TRE Requirements Repository

  Python

  •

  Other

  •0•0•0•0•Updated Feb 3, 2026Feb 3, 2026

• disease_perception

  Public
  Disease PERCEPTION: Personalized Comorbidity Profile Generation

  comorbiditiescomorbidity-network

  JavaScript

  •

  GNU Affero General Public License v3.0

  •1•3•7•10•Updated Feb 3, 2026Feb 3, 2026

• python-groovy-parser

  Public
  Repo with a proof of concept of Groovy parser

  Python

  •

  Apache License 2.0

  •1•0•1•0•Updated Feb 2, 2026Feb 2, 2026

• WfExS-backend

  Public
  Workflow Execution Service Backend

  workflowsresearch-objectesg+ 4eosc-lifewfexsejp-rdeosc-entrust

  Python

  •

  Apache License 2.0

  •6•20•23•2•Updated Feb 2, 2026Feb 2, 2026

• RSQKit-EVERSE

  Public
  Research Software Quality Kit - a resource for helping researchers improve the quality of software they write

  HTML

  •

  Other

  •53•0•0•0•Updated Jan 30, 2026Jan 30, 2026

• oeb-project-markdown-editor

  Public
  OpenEBench Scientific summary markdown editor for projects

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jan 30, 2026Jan 30, 2026

• benchmarking-data-model

  Public
  OpenEBench Benchmarking Data Model repository

  benchmarkingbackenddata-model+ 5scientificvreopenebenchelixir-europeelixir-spain

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •7•2•7•0•Updated Jan 30, 2026Jan 30, 2026

• impact-data

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1.1k•0•0•0•Updated Jan 29, 2026Jan 29, 2026

• OEB_level2_data_migration

  Public
  openebench

  Python

  •

  GNU General Public License v3.0

  •2•0•6•0•Updated Jan 21, 2026Jan 21, 2026

• opeb-pub-enricher

  Public
  OpenEBench metadata citations enricher

  openebench

  Python

  •

  GNU Lesser General Public License v2.1

  •0•1•0•0•Updated Dec 20, 2025Dec 20, 2025

• InSoLiTo

  Public
  Inferring Social Life of Tools (InSoLiTo) is an OpenEBench project that provide guidance on scientific tools worth benchmarking

  openebench

  Python

  •

  MIT License

  •2•2•7•0•Updated Dec 15, 2025Dec 15, 2025

• wiktionary-term-fetcher

  Public
  Wiktionary term fetcher, written in python

  pythonwiktionarywfexs

  Python

  •

  GNU Lesser General Public License v2.1

  •0•0•0•1•Updated Dec 15, 2025Dec 15, 2025

• openEBench-nuxt-v3

  Public
  OpenEBench Micro Frontends. Nuxt 3 version

  vuenuxtjs2024

  Vue

  •

  Apache License 2.0

  •0•0•13•1•Updated Nov 26, 2025Nov 26, 2025

• openVRE

  Public
  Open Virtual Research Environment

  javascripthtmlphp+ 2mongodbvre

  JavaScript

  •

  Apache License 2.0

  •3•12•0•0•Updated Nov 26, 2025Nov 26, 2025

• bench_event_api

  Public
  bench_event_api

  flaskopenebench

  Python

  •

  GNU Lesser General Public License v2.1

  •3•1•0•1•Updated Nov 24, 2025Nov 24, 2025

• eucanimage-portal

  Public
  EuCanImage Web Portal

  HTML

  •0•1•12•0•Updated Nov 18, 2025Nov 18, 2025

• RWFileLock

  Public
  Readers / writers file lock python helper class

  pythonlibrary

  Python

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated Nov 18, 2025Nov 18, 2025

• seed-als-portal

  Public
  Web portal for SEED-ALS project

  TypeScript

  •0•0•4•3•Updated Oct 15, 2025Oct 15, 2025

• software-id-benchmark

  Public
  Benchmarking suite for evaluating software metadata identity resolution using language models

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 9, 2025Oct 9, 2025

• github-metadata-api

  Public
  API to extract metadata from a GitHub repository and update files.

  githubnodejsmetadata-extraction+ 1software-metadata

  JavaScript

  •

  MIT License

  •0•1•2•1•Updated Oct 8, 2025Oct 8, 2025

• observatory-api

  Public
  Software Observatory API

  fairsoftfastapifair-software+ 1software-metadata

  Python

  •

  MIT License

  •0•1•1•0•Updated Oct 8, 2025Oct 8, 2025

• licenses-mapping

  Public
  A tool to map strings to SPDX licenses names or IDs.

  licensingspdxfastapi

  Python

  •

  Apache License 2.0

  •0•0•3•0•Updated Oct 8, 2025Oct 8, 2025

• github-importer

  Public
  Imports GitHub metadata from repositories into the Software Observatory database.

  openebenchsoftware-observatory

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 8, 2025Oct 8, 2025