Skip to content

@opentargets Open Targets

Change the repository type filter

All

    Repositories list

    91 repositories

    • ot-ui-apps

      Public
      Open Targets Platform web applications
      javascriptgraphqlreactjswebappembl-ebivitejsturborepoeuropean-bioinformatics-institute
      TypeScript
      •
      Apache License 2.0
      •17•10•0•15•Updated Dec 19, 2025Dec 19, 2025

    • Gentropy-manuscript

      Public
      Repository to host code supporting the analysis for the TBA
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • gentropy

      Public
      Open Targets python framework for post-GWAS analysis
      pythonopen-sourcegwasgeneticspysparkdrug-discovery
      Jupyter Notebook
      •
      Apache License 2.0
      •15•50•0•14•Updated Dec 18, 2025Dec 18, 2025

    • opentargets.github.io

      Public
      Open Targets corporate website code using Jekyll
      jekyll
      HTML
      •
      Apache License 2.0
      •3•9•0•2•Updated Dec 18, 2025Dec 18, 2025

    • ot-snapshot

      Public
      Snapshots for all the components used to generate a release of the Open Targets Platform
      Shell
      •0•1•0•0•Updated Dec 18, 2025Dec 18, 2025

    • ot_croissant

      Public
      Exploratory version for OT croissant
      Jupyter Notebook
      •0•1•0•0•Updated Dec 18, 2025Dec 18, 2025

    • open-targets-platform-mcp

      Public
      Official MCP server implementation for accessing Open Targets Data
      Python
      •
      Apache License 2.0
      •0•2•3•0•Updated Dec 18, 2025Dec 18, 2025

    • platform-deployment-nextgen

      Public
      Kubernetes (GKE) deployment of the Open Targets Platform.
      HCL
      •
      Apache License 2.0
      •0•1•0•0•Updated Dec 18, 2025Dec 18, 2025

    • pts

      Public
      Open Targets Pipeline Transformation Stage
      Python
      •
      Apache License 2.0
      •0•0•0•4•Updated Dec 18, 2025Dec 18, 2025

    • platform-api

      Public
      GraphQL and Rest API rewrite of the current Open Targets platform API
      Scala
      •
      Apache License 2.0
      •8•15•0•2•Updated Dec 18, 2025Dec 18, 2025

    • platform-output-support

      Public
      POS is an automatic and unified place to perform a release of OT Platform to the public
      Python
      •3•2•0•0•Updated Dec 17, 2025Dec 17, 2025

    • json_schema

      Public
      Open Targets target-disease association schema
      Python
      •
      Apache License 2.0
      •10•12•0•2•Updated Dec 15, 2025Dec 15, 2025

    • platform-docs

      Public
      https://platform-docs.opentargets.org/
      1•1•0•1•Updated Dec 15, 2025Dec 15, 2025

    • platform-etl-backend

      Public
      Scala
      •
      Apache License 2.0
      •8•10•0•2•Updated Dec 15, 2025Dec 15, 2025

    • evidence_datasource_parsers

      Public
      script to convert phewascatalog database to JSONs, with ENSGIDs and EFO ids.
      Python
      •
      Apache License 2.0
      •3•8•0•5•Updated Dec 15, 2025Dec 15, 2025

    • seqqurat

      Public
      Duckdb interface for open targets outputs
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 14, 2025Dec 14, 2025

    • orchestration

      Public
      Open Targets pipeline orchestration layer
      Python
      •
      Apache License 2.0
      •1•2•0•4•Updated Dec 12, 2025Dec 12, 2025

    • pis

      Public
      Open Targets Pipeline Input Stage
      Python
      •
      Apache License 2.0
      •5•5•0•1•Updated Dec 11, 2025Dec 11, 2025

    • ot-release-metrics

      Public
      Collection and visualisation of Open Targets Platform release metrics.
      Python
      •
      Apache License 2.0
      •0•1•0•2•Updated Dec 5, 2025Dec 5, 2025

    • qtlformer

      Public
      Transformation of eQTL Catalogue fine mapping results to gentropy format
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • curation

      Public
      mappings used by the open targets platform to integrate data sources
      Python
      •
      Apache License 2.0
      •1•5•0•0•Updated Dec 2, 2025Dec 2, 2025

    • platform-deployment-standalone

      Public
      Open Targets Platform standalone deployment tool
      Go
      •
      Apache License 2.0
      •2•7•2•0•Updated Nov 25, 2025Nov 25, 2025

    • OnToma

      Public
      Map your disease and phenotype terms to the Open Targets platform ontology
      Python
      •
      Apache License 2.0
      •6•22•0•1•Updated Nov 19, 2025Nov 19, 2025

    • clinical_mining

      Public
      Clinical mining extraction (in active development)
      Python
      •
      Apache License 2.0
      •0•3•0•1•Updated Nov 19, 2025Nov 19, 2025

    • SRAgent

      Public
      LLM agents for working with the SRA and associated bioinformatics databases.
      Python
      •
      MIT License
      •31•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • hackathon-tasks

      Public
      Central hub for Open Targets Hackathon 2025 - Track projects, collaborate with teams, and build innovative tools using the Open Targets Platform
      open-sourcehackathonembl-ebi
      1•4•93•0•Updated Nov 10, 2025Nov 10, 2025

    • otter

      Public
      Open Targets' Task ExecutoR
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 7, 2025Nov 7, 2025

    • gentroutils

      Public
      Utility CLI tools for gentropy orchestration
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • ot-ai-api

      Public
      Specialised API service that provides AI-driven endpoints to support the Open Targets web application, integrating natural language processing (NLP) and data extraction features
      JavaScript
      •
      Apache License 2.0
      •1•0•0•1•Updated Nov 3, 2025Nov 3, 2025

    • vep-image

      Public
      Custom Ensembl VEP image used for the purpose of variantIndex annotation
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025