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@lbl-cbg Computational Biosciences Group, LBNL

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    8 repositories

    • FlowKit

      Public
      A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •54•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • alphafold3

      Public
      AlphaFold 3 inference pipeline.
      Python
      •
      Other
      •1.1k•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • CAT

      Public
      CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
      Python
      •
      MIT License
      •35•2•0•0•Updated Dec 5, 2024Dec 5, 2024

    • alphaflow

      Public
      AlphaFold Meets Flow Matching for Generating Protein Ensembles
      Python
      •
      MIT License
      •72•0•1•0•Updated Aug 23, 2024Aug 23, 2024

    • Str2Str

      Public
      Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
      Python
      •
      MIT License
      •8•0•0•0•Updated Mar 7, 2024Mar 7, 2024

    • ColabFold

      Public
      Making Protein folding accessible to all!
      Jupyter Notebook
      •
      MIT License
      •693•0•0•1•Updated Feb 14, 2024Feb 14, 2024

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.6k•0•1•1•Updated Feb 14, 2024Feb 14, 2024

    • alphafold-old

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.6k•1•0•0•Updated Jan 23, 2024Jan 23, 2024