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    119 repositories

    • scipion-em-recovar

      Public
      Plugin for the integration of RECOVAR
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Feb 10, 2026Feb 10, 2026

    • scipion-em-opusdsd

      Public
      Plugin to use OPUS-DSD programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Feb 10, 2026Feb 10, 2026

    • scipion-em-fidder

      Public
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 10, 2026Feb 10, 2026

    • scipion-em-dynamo

      Public
      Dynamo tomography plugin for Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•5•0•Updated Feb 10, 2026Feb 10, 2026

    • scipion-em-relion

      Public
      Plugin to use Relion SPA programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•3•27•7•Updated Feb 10, 2026Feb 10, 2026

    • scipion-em-cryodrgn

      Public
      Plugin to use cryoDRGN programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•3•2•3•Updated Feb 9, 2026Feb 9, 2026

    • scipion-em-cryosparc2

      Public
      Plugin to use cryoSPARC2 programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •1•2•14•0•Updated Feb 9, 2026Feb 9, 2026

    • scipion-em-imod

      Public
      Plugin to use some of the Tomography tools from IMOD in Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •2•2•19•2•Updated Feb 5, 2026Feb 5, 2026

    • scipion-em-membrain

      Public
      Plugin to run MemBrain software within Scipion
      tomosegmentationmembranescryo-et
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • scipion-em-tomo

      Public
      Base tomography Scipion plugin with data model definition
      tomo
      Python
      •
      GNU General Public License v3.0
      •5•9•41•0•Updated Feb 3, 2026Feb 3, 2026

    • scipion-em-chimera

      Public
      Plugin to use Chimera programs within the Scipion framework
      atom
      Python
      •
      GNU General Public License v3.0
      •3•2•3•1•Updated Feb 2, 2026Feb 2, 2026

    • scipion-em-warp

      Public
      Plugin to use Warp programs within the Scipion framework
      spatomo
      Python
      •
      GNU General Public License v3.0
      •0•0•1•1•Updated Jan 30, 2026Jan 30, 2026

    • scipion-em-gapstop

      Public
      Plugin to use Gapstop_TM in Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • scipion-em-prody

      Public
      Scipion plugin for ProDy
      Python
      •
      GNU General Public License v3.0
      •1•4•9•2•Updated Jan 28, 2026Jan 28, 2026

    • scipion-em-appion

      Public
      Plugin to use Appion's DoGpicker within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Jan 28, 2026Jan 28, 2026

    • scipion-em-tomosegmemtv

      Public
      Scipion plugin for segmentation and annotation of membranes (with tomoSegmenTV and membSegAnnotator)
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•4•2•0•Updated Jan 28, 2026Jan 28, 2026

    • scipion-em-tomo3d

      Public
      Plugin for the software of Jose Jesus Fernandez
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Jan 28, 2026Jan 28, 2026

    • scipion-em-tardis

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Jan 28, 2026Jan 28, 2026

    • scipion-em-sphire

      Public
      Plugin to use Sphire programs within the Scipion framework
      spatomo
      Python
      •
      GNU General Public License v3.0
      •1•0•2•1•Updated Jan 28, 2026Jan 28, 2026

    • scipion-em-reliontomo

      Public
      Plugin to use Relion tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •3•2•5•1•Updated Jan 28, 2026Jan 28, 2026

    • scipion-em-novactf

      Public
      Plugin to use NovaCTF in scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•1•1•Updated Jan 28, 2026Jan 28, 2026

    • scipion-em-smartscope

      Public
      Plugin to manage the interaction with the SmartScope framework.
      Python
      •
      GNU General Public License v3.0
      •0•4•1•1•Updated Jan 28, 2026Jan 28, 2026

    • scipion-em-emantomo

      Public
      Plugin to use Eman2 tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•7•0•Updated Jan 27, 2026Jan 27, 2026

    • scipion-em-deepfinder

      Public
      Scipion plugin for deepfinder (tomography picker)
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•3•2•0•Updated Jan 27, 2026Jan 27, 2026

    • scipion-em-cryocare

      Public
      Plugin to integrate cryoCARE: denoiser for tomography
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Jan 27, 2026Jan 27, 2026

    • scipion-em-aretomo

      Public
      Plugin to use AreTomo within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Jan 27, 2026Jan 27, 2026

    • .github

      Public
      Repo to provide workflow templates for the rest of the repos in this organization
      0•0•0•0•Updated Jan 27, 2026Jan 27, 2026

    • scipion-app

      Public
      Base Scipion application that is based on pyworkflow and all extension plugins
      core
      Python
      •
      GNU General Public License v3.0
      •3•8•9•2•Updated Jan 27, 2026Jan 27, 2026

    • scipion-pyworkflow

      Public
      Underlying pyworkflow module for the Scipion framework
      core
      Python
      •
      GNU General Public License v3.0
      •8•5•40•3•Updated Jan 27, 2026Jan 27, 2026

    • scipion-em-mapq

      Public
      atom
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jan 27, 2026Jan 27, 2026