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    12 repositories

    • SINGER

      Public
      Sampling and inference of genealogies with recombination
      C++
      •
      MIT License
      •12•54•22•1•Updated Mar 20, 2026Mar 20, 2026

    • pyrho

      Public
      Fast inference of fine-scale recombination rates based on fused-LASSO
      Python
      •
      MIT License
      •7•60•11•0•Updated Feb 10, 2026Feb 10, 2026

    • ldpop

      Public
      Two locus likelihoods and ARGs under changing population size
      Python
      •
      MIT License
      •3•14•1•1•Updated Dec 18, 2025Dec 18, 2025

    • momi2

      Public
      Infer demographic history with the Moran model
      Python
      •
      GNU General Public License v3.0
      •10•51•29•0•Updated Jun 14, 2025Jun 14, 2025

    • smcpp

      Public
      SMC++ infers population history from whole-genome sequence data.
      C++
      •
      GNU General Public License v3.0
      •34•173•98•4•Updated Jan 20, 2024Jan 20, 2024

    • spectralHMM

      Public
      A spectral method for inferring selection from time series data
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 18, 2022Jul 18, 2022

    • spectralTDF

      Public
      spectralTDF is a software program for computing the transition density function of the Wright-Fisher diffusion process in a population of piecewise constant siz…
      Other
      •0•0•0•0•Updated Jul 16, 2022Jul 16, 2022

    • diCal2

      Public
      diCal2 infers complex demographic histories from whole-genome sequencing data
      Java
      •
      GNU General Public License v3.0
      •0•7•0•0•Updated Jul 15, 2022Jul 15, 2022

    • LDhelmet

      Public
      Software package for estimating fine-scale recombination rate.
      C++
      •
      GNU General Public License v3.0
      •2•18•2•0•Updated Jun 8, 2021Jun 8, 2021

    • lecture_notes

      Public
      Lecture Notes on Computational and Mathematical Population Genetics
      15•200•0•0•Updated May 5, 2021May 5, 2021

    • defiNETti

      Public
      defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particular, it is well-suited fo…
      Python
      •3•20•0•0•Updated Apr 10, 2018Apr 10, 2018

    • momi

      Public
      MOran Models for Inference
      Python
      •
      GNU General Public License v3.0
      •5•9•0•0•Updated Mar 7, 2018Mar 7, 2018
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