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czieoss6-biocgpu
PublicBugSigDBExports
Publicai-agent-skills
PublicA collection of AI agent skills relevant to our work, including analysis and development of R/Bioconductor packages + statistical and bioinformatic analysis.curatedOvarianData
PublicThe curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancercuratedCRCData
PublicThe curatedCRCData package provides ExpressionSet data with curated metadata and microarray gene expression data from colorectal cancer tumors.BugSigDB
Publiclefser
PublicR implementation of the LEfSe method- Sample Metadata Curation for curatedMetagenomicData
curatedMetagenomicData
PublicCurated Metagenomic Data of the Human Microbiomebioanalyzer-backend
PublicStreamline BugSigDB curation with AI-powered scientific paper analysis. Automatically extracts essential microbiome study metadata from research papers, reducin…curator-desk
Publicrepo-audits
PublicMultiAssayExperiment
PublicBioconductor package for management of multi-assay dataconfig
PublicTCGAutils
PublicToolbox package for organizing and working with TCGA databedbaser
PublicterraTCGAdata
PublicTCGA data access on TerraHMP16SData
Public16S rRNA Sequencing Data from the Human Microbiome ProjectcBioPortalData
PublicIntegrate the cancer genomics portal, cBioPortal, using MultiAssayExperimentGSEABenchmarkeR
PublicReproducible GSEA BenchmarkingSingleCellMultiModal
PublicSingle Cell multimodal data scripts for downloading datasetsbugphyzz
PublicHarmonized annotation of microbial physiologybugsigdbr
PublicR-side access to published microbial signatures from BugSigDBMicrobiomeBenchmarkData
PublicData for benchmarking in microbiome research.curatedTCGAData
PublicCurated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment ObjectsdoppelgangR
PublicIdentify possibly duplicate samples in a list of ExpressionSetsoncoKBData
PublicExpose the Onco KB API via R / BioconductorHGNCREST
Public.github
Public
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