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@uab-cgds-worthey Center for Computational Genomics and Data Science (CGDS)

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    21 repositories

    • Public-CGDS-Repo-Discovery

      Public
      An organized listing of public repositories within CGDS to help with discovery of works completed by CGDS.
      devops
      devops
      0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • rosalution

      Public
      Rosalution assists researchers study genetic variation 🧬 in patients 🧑🏾‍🤝‍🧑🏼 by helping select candidate animal models 🐀🐁🐠🪱 to replicate the variation to furthe…
      software
      software
      JavaScript
      •
      GNU General Public License v3.0
      •2•9•2•1•Updated Apr 16, 2026Apr 16, 2026

    • mecfs-cohort-analysis

      Public
      Transcriptomics and phenotypic analysis of a cohort of ME/CFS patients.
      cohort-analysisworkflowrrnaseq-analysis
      cohort-analysisworkflowrrnaseq-analysismecfsphenotype-analysis
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•1•Updated Apr 15, 2026Apr 15, 2026

    • CoSIA

      Public
      Fork of Lasseignelab's Cross Species Investigation and Analysis : an R package that provides an alternative framework for cross-species transcriptomic compariso…
      R
      •
      MIT License
      •2•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • quac

      Public
      🦆 Quality Control of WGS and exome samples 🦆
      pipeline
      pipeline
      Python
      •
      GNU General Public License v3.0
      •1•7•14•1•Updated Apr 1, 2026Apr 1, 2026

    • pws_wgs_remote_study

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • learnings_journal

      Public
      Tips and tricks we learn at CGDS to get stuff working
      support
      support
      Python
      •0•4•1•1•Updated Feb 11, 2026Feb 11, 2026

    • DITTO

      Public
      Variant Deleteriousness prediction tool using AI
      dittosciops
      dittosciops
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 29, 2026Jan 29, 2026

    • somatic-mutation-signal-identification

      Public
      Mutational signal profiling from somatic variation to detect disrupted mechanisms in somatic cells (typically cancers) using https://github.com/AlexandrovLab/Si…
      somatic-mutationssciopsgenomics-analysis
      somatic-mutationssciopsgenomics-analysis
      Python
      •0•0•1•0•Updated Jan 26, 2026Jan 26, 2026

    • transcriptome-wide

      Public archive
      R
      •1•0•0•0•Updated Oct 18, 2025Oct 18, 2025

    • multiple-chorangiomas-subclone-analysis

      Public
      Process and setup for determining clonal populations from WGS data of multiple chorangiomas tissue
      genomicspvpsubclonal-deconvolution
      genomicspvpsubclonal-deconvolution
      Python
      •0•1•0•0•Updated Jun 4, 2025Jun 4, 2025

    • DITTO-API

      Public
      This is the API for serving up DITTO scores and hosting on Cloud.rc at UAB.
      dittosciops
      dittosciops
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 19, 2025May 19, 2025

    • muscular_dystrophy_rnaseq_vma21_manuscript

      Public
      Muscular Dystrophy (XMEA) Bulk RNA-Seq Analysis (DGE and Sashimi-Splicing)
      Shell
      •
      GNU General Public License v3.0
      •1•1•0•1•Updated May 16, 2025May 16, 2025

    • cgds_repo_template

      Public template
      Template repo for CGDS repos. Visit the webpage below for usage instructions.
      support
      support
      Other
      •1•3•4•0•Updated Dec 24, 2024Dec 24, 2024

    • DMEA

      Public
      Drug Mechanism Enrichment Analysis
      R
      •1•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • DITTO-UI

      Public
      Easy to use web interface for biologists to look for genetic variants and understand their deleteriousness using DITTO scores.
      bioinformaticsgenomicsclinvar
      bioinformaticsgenomicsclinvarprecision-medicinedittopathogenic-variantssciopsrare-diseasestreamlit-webapp
      Python
      •
      GNU General Public License v3.0
      •0•2•3•0•Updated Oct 28, 2024Oct 28, 2024

    • eslint-config-cgds

      Public
      CGDS' ESLint's linting & formatting shareable config for JavsScript projects
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • .github

      Public
      The Center for Computational Genomics and Data Science (CGDS) seeks to develop and apply tools and methods to uncover new and novel information that provide ben…
      devops
      devops
      0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

    • cgds-domain-home-page

      Public
      The base HTML page and to be packaged and deployed to cgds.uab.edu
      devops
      devops
      CSS
      •0•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • shareops-self-hosted-runners-demo

      Public
      Weeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated Aug 8, 2023Aug 8, 2023

    • mixoviz

      Public
      Detection and visualization of 2n/3n mixoploidy from a VCF
      Python
      •
      Other
      •2•0•0•0•Updated May 20, 2021May 20, 2021
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