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Commits on Jan 4, 2021

• Fix naming errors in notebook

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Commits on Aug 17, 2020

• Added actions workflow for Nextflow test dataset

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Commits on Jun 24, 2020

• Added doi to readme

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Commits on Jun 9, 2020

• Documentation updates

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Commits on Jun 8, 2020

• Updated main figure

  cflerin

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Commits on May 18, 2020

• Add garnett cell type classifications

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• Merge pull request #13 from kant/patch-1

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Commits on May 13, 2020

• Minor fix on line 72

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Commits on Apr 17, 2020

• Merge pull request #10 from aertslab/fix_file_structure_sample_data

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• Fix file structure of sample_data* to follow Cell Ranger v2 output file structure and add gzip compression

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Commits on Apr 3, 2020

• Merge pull request #9 from aertslab/dependabot/pip/bleach-3.1.4

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Commits on Mar 31, 2020

• Bump bleach from 3.1.2 to 3.1.4

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Commits on Mar 26, 2020

• Merge pull request #8 from aertslab/dependabot/pip/bleach-3.1.2

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Commits on Mar 24, 2020

• Bump bleach from 3.1.1 to 3.1.2

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Commits on Mar 20, 2020

• Updates to PBMC10k downstream notebooks

  cflerin

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Commits on Mar 19, 2020

• Updated PBMC10k SCENIC notebook

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Commits on Mar 13, 2020

• Merge pull request #7 from aertslab/dependabot/pip/psutil-5.6.6

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Commits on Mar 12, 2020

• Bump psutil from 5.6.3 to 5.6.6

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Commits on Feb 27, 2020

• Merge pull request #6 from aertslab/dependabot/pip/bleach-3.1.1

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Commits on Feb 24, 2020

• Bump bleach from 3.1.0 to 3.1.1

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Commits on Feb 14, 2020

• Print addiitonal diagnostic info when running

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• Updated readme (formatting)

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• Updated test config file paths

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Commits on Feb 13, 2020

• Updated readme

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• Updated sample date and names

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Commits on Feb 12, 2020

• Merge pull request #5 from aertslab/dev

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• Updates to readme for tiny test profile

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• Added a test profile for pipeline testing

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• Added new tiny sample data set

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• Add option to pass a seed to the GRN step

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• Added alternate method to run GRN step

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• Cleanup 2: cleanup old code

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• Cleanup 1: updated requirements file, removed old Dockerfile

  cflerin

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• Updated container links, remove singularity no-home

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Commits on Jan 30, 2020

• Merge branch 'master' of github.com:aertslab/SCENICprotocol

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