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Commits on Jun 6, 2025

• add note about indels in the readme

  brentp

  committed
  93ec1da

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• Merge branch 'analzye-indels'

  brentp

  committed
  0b23096

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• update lock file

  brentp

  committed
  09f3ad0

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• prep for release

  Show description for bce6d1a
  brentp

  committed
  bce6d1a

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Commits on Jun 5, 2025

• add script to plot indel error rates

  brentp

  committed
  c9aefc8

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• indels: report hp-distance

  brentp

  committed
  d1dbd37

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Commits on Jun 4, 2025

• combine-errors: handle new indel format

  brentp

  committed
  941f934

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• update changes and version

  brentp

  committed
  f649ba7

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• remove old log statement

  brentp

  committed
  8a23ca3

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Commits on Jun 3, 2025

• report indel lengths

  brentp

  committed
  f5745ee

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Commits on Jun 2, 2025

• work on better supporting and reporting indels

  brentp

  committed
  58cf655

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Commits on May 20, 2025

• closes #14

  brentp

  committed
  9606814

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• combine_counts: handle NA in hp_dist

  brentp

  committed
  bc74cf0

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Commits on May 16, 2025

• better error messages from combine_counts

  brentp

  committed
  d6563a9

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Commits on May 13, 2025

• fix help for lua expressions

  brentp

  committed
  f551762

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Commits on May 5, 2025

• documnet lua-api

  brentp

  committed
  1a77e31

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Commits on Apr 29, 2025

• fix naming to not start with number

  brentp

  committed
  5c20d73

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Commits on Apr 23, 2025

• better error with bad output directory

  brentp

  committed
  a0a3450

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• add error message when no bams are given. remove lua print statement

  brentp

  committed
  3e5709d

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Commits on Apr 20, 2025

• clarify

  brentp

  committed
  055463b

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Commits on Apr 19, 2025

• lua expressions

  brentp

  committed
  e8cda5c

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Commits on Feb 21, 2025

• bump version

  brentp

  committed
  b25ff22

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• fix reporting when neither read matches the reference

  brentp

  committed
  3dd5990

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Commits on Feb 11, 2025

• Fix overflow when reporting stats for reads longer than 255 bp (#12)

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  pontushojer

  authored
  7291805

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Commits on Feb 4, 2025

• respect include, exclude in denominator calc and for indels

  brentp

  committed
  59cfc4c

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Commits on Feb 3, 2025

• fix: was including chromosomes not seen in --include.

  Show description for 8b3f997
  brentp

  committed
  8b3f997

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• allow read-length up to u32::MAX.

  Show description for 55da880
  brentp

  committed
  55da880

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Commits on Jan 6, 2025

• prep for release

  brentp

  committed
  83761d1

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Commits on Dec 20, 2024

• make hp distance i16 to allow for > 127 distance

  brentp

  committed
  539314c

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Commits on Dec 11, 2024

• fix idna insecurity by bumping

  brentp

  committed
  55216b5

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• cleanup and hp dist

  brentp

  committed
  f4b7f23

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Commits on Dec 9, 2024

• bump rust-htslib version to default since it contains my fixes

  brentp

  committed
  e16de1f

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Commits on Dec 8, 2024

• fix it

  brentp

  committed
  0a7eda7

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Commits on Dec 7, 2024

• cleanup logging

  brentp

  committed
  03eef84

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• fix indel error counts

  brentp

  committed
  fbe6c60

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