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86 stars written in Python
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Machine learning prediction of enzyme optimum pH

Python 47 10 Updated Apr 29, 2025
Python 43 8 Updated Aug 13, 2025

A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery

Python 43 8 Updated Sep 1, 2025

Source code of the Stanford Ribonanza RNA Folding first place solution

Python 40 5 Updated Dec 21, 2023

A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Learning".

Python 37 5 Updated Aug 1, 2025
Python 31 9 Updated Oct 18, 2024
Python 29 3 Updated Jan 21, 2024
Python 28 3 Updated Aug 1, 2025

A Tool for low Coverage HiFi Data Assembly

Python 25 Updated Oct 30, 2025
Python 21 4 Updated Oct 12, 2025

LLMs for high-throughput mining and generation of antimicrobial peptides

Python 19 4 Updated Oct 10, 2025
Python 17 2 Updated Sep 5, 2024
Python 16 3 Updated Jan 2, 2025
Python 15 2 Updated Jan 23, 2024

The GAN model for designing AMP

Python 15 2 Updated Aug 19, 2025
Python 13 1 Updated Jul 14, 2023
Python 9 2 Updated Sep 9, 2025

The implementation of deepAMPNet for identification of antimicrobial peptides.

Python 9 Updated Jun 25, 2024
Python 8 2 Updated Feb 4, 2025
Python 6 2 Updated Mar 28, 2024
Python 2 1 Updated Mar 29, 2022
Python 1 2 Updated Apr 23, 2024