gn = get_model("GN", distribution="gamma", with_rate=True)
tree = make_tree(tip_names=aln.names)
lf = gn.make_likelihood_function(tree, bins=4)
lf.set_param_rule("bprobs", is_constant=True)
lf.set_alignment(aln)
lf.get_ens_tree()File ~/miniconda3/envs/c312/lib/python3.12/site-packages/cogent3/recalculation/scope.py:223, in _Defn._getPosnForScope(self, *args, **scope)
221 raise InvalidScopeError(f"no value for {self.name} at {scope}")
222 if len(posns) > 1:
--> 223 raise IncompleteScopeError(
224 f"{len(posns)} distinct values of {self.namel within {scope}"
225
226 return the_one_item_in(posns)
IncompleteScopeError: "4 distinct values of psubs within {'edge': 'Human', 'bin': None, 'locus': None}"
generates