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Commits on Dec 22, 2025

• Merge pull request #243 from CompOmics/fix/report-gui-fixes

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Commits on Dec 18, 2025

• report: Catch indexerror if no confidently identified PSMs (fixes #231)

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• Merge pull request #242 from CompOmics/fix/report-gui-fixes

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  RalfG

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• Only run windows installer test on main (condition was removed in #241)

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Commits on Dec 15, 2025

• Fix unused import

  RalfG

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• Merge branch 'main' of https://github.com/compomics/ms2rescore into fix/report-gui-fixes

  RalfG

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• Fix issues with missing imports in Windows installer

  RalfG

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• Also write log when running through GUI

  RalfG

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• In GUI, always write both stdout and stderr to devnull if None, fixing DeepLC issues in GUI in debug mode.

  RalfG

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• Fix broken report due to mismatched plotly.js version; get plotly.js version dynamically

  RalfG

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• Merge pull request #241 from CompOmics/update-im2deep-version

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  RalfG

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• Propagate working uv install for windows-installer to publish workflow; re-enable jobs that were disabled for testing

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• Another actions test

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• Handle exceptions during package collection and log warnings for failures

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• Another actions test

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• Try with `uv sync`

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• Test pinned dependencies for pyinstaller through dependency group

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Commits on Dec 11, 2025

• update im2deep version, fix docstring

  rodvrees

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Commits on Oct 22, 2025

• Merge pull request #240 from CompOmics/fix/docs-build

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  RalfG

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• Version bump

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• Update readthedocs config to use dependency groups

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Commits on Oct 20, 2025

• Merge pull request #239 from CompOmics/feature/add-regex-validation

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  RalfG

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• Update tests

  RalfG

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• Implement suggested changes

  RalfG

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• Implement requested fixes

  RalfG

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• Implement suggested fixes

  RalfG

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• Add validation and exception raising for PSM and spectrum ID regex patterns

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Commits on Oct 17, 2025

• Merge pull request #238 from CompOmics/feature/update-lockfile

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Commits on Oct 16, 2025

• Merge branch 'main' into feature/update-lockfile

  RalfG

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• Updated lockfile with newer uv version

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• Merge pull request #237 from CompOmics/update-python-versions

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  RalfG

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• Test all Python versions, but do not fail fast, allowing the required ones to finish successfully.

  RalfG

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• Update requires_python

  RalfG

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• Drop 3.14 tests for now (no 3.14 support in PyOpenMS)

  RalfG

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• Fix issue where profile parameter in config files was ignored and only the CLI argument was checked.

  RalfG

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