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Commits on Aug 22, 2016

• Update README.rst

  dereneaton

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Commits on Apr 14, 2016

• 3.0.66 push: fix to alleles output, loci parse endings as |

  dereneaton

  committed
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Commits on Mar 28, 2016

• Merge pull request #27 from ernstki/master

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  dereneaton

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• fix to bug not finishing loop to print ALL loci to phynex.

  dereneaton

  committed
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Commits on Mar 9, 2016

• Updated MUSCLE download link in README

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  ernstki

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Commits on Feb 10, 2016

• upped version number to 3.0.64

  dereneaton

  committed
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• fix to bug counting bi-alleles. fix to chunker for fast muscle aligning -- removed oloc numbers.

  dereneaton

  committed
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Commits on Nov 1, 2015

• added partitioning info for phy nex outputs

  dereneaton

  committed
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Commits on Oct 29, 2015

• fixed locus counter splitter

  dereneaton

  committed
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Commits on Oct 26, 2015

• loci file now has unfiltered and filtered number IDs for loci

  dereneaton

  committed
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• added depths output and updated to 3.0.63

  dereneaton

  committed
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Commits on Oct 20, 2015

• Merge branch 'master' of https://github.com/dereneaton/pyrad

  dereneaton

  committed
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• catch errors in phynex

  dereneaton

  committed
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• version to 3.0.62

  dereneaton

  committed
  934c467

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• missing a chunk, fixed

  dereneaton

  committed
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• higher threshold on third base in allelecounts

  dereneaton

  committed
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Commits on Oct 1, 2015

• Merge pull request #23 from StuntsPT/master

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  dereneaton

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Commits on Sep 25, 2015

• Fixed a missing '+'

  StuntsPT

  committed
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Commits on Sep 17, 2015

• more stringent matching for revcomp in gbs data, avoids bad alignments

  dereneaton

  committed
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• Merge branch 'master' of https://github.com/dereneaton/pyrad

  dereneaton

  committed
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• filter out short loci <32 after edge trimming

  dereneaton

  committed
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Commits on Sep 12, 2015

• readme update

  dereneaton

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• readme update

  dereneaton

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Commits on Sep 11, 2015

• pyrad version to 3.0.61

  dereneaton

  committed
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• memory load does not exceed 1GB for phy/nex output

  dereneaton

  committed
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• memory load does not exceed 1GB for phy/nex output

  dereneaton

  committed
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• greatly reduced memory load

  dereneaton

  committed
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• cosmetic

  dereneaton

  committed
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• cleaner code, reduced memory for many processes

  dereneaton

  committed
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Commits on May 27, 2015

• readme update

  dereneaton

  committed
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• readme update

  dereneaton

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• readme update

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• readme update

  dereneaton

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• readme update

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• readme update

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