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Commits on Aug 4, 2022

• Bumping pysam version to >= 0.16.0.1 due to samtools bug in mpileup

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Commits on Aug 3, 2022

• Fixes #103, probbaly caused by new HTseq version

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Commits on Aug 12, 2020

• Merge pull request #85 from dieterich-lab/devel

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• Updating setup.py

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Commits on Aug 7, 2020

• Adding direct circtools interface

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Commits on Jul 30, 2020

• Fixing imports

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• Fixing HTSeq setup issue

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• Fixing HTSeq setup issue

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• Stating Python3 porting

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Commits on Jul 9, 2020

• Merge branch 'master' of github.com:dieterich-lab/DCC

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• Fixing wrong line numbers as suggest by @buddej

  tjakobi

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Commits on Jun 18, 2020

• Support for new Chimeric.out.junction files with header

  tjakobi

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Commits on Dec 18, 2019

• Version bump to 0.4.8

  tjakobi

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• Fixing incorrect handling of mate2 junction files in -Pi mode

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Commits on Aug 13, 2019

• Refining version restrictions for numpy and pandas to assure 2.7 support

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• Adding version restrictions for numpy and pandas to assure 2.7 support

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Commits on Jul 4, 2019

• Fixes #36

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• Fixes #66

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Commits on Jan 15, 2019

• Fixes #58

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Commits on Nov 2, 2018

• Fixes #58: only remove empty lines from BAM list if parameter set

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Commits on Sep 10, 2018

• Version bump to 0.4.7

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Commits on Sep 9, 2018

• Fixes #57

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• Additional fixes fot dieterich-lab/circtools#64

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• Fixes dieterich-lab/circtools#64. Empty lines are now actively removed from the samplesheet file.

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• Changing min HTseq version to 0.11.0 to fix pysam dependency

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Commits on Aug 10, 2018

• Syncing template from circtools projects

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Commits on Jul 26, 2018

• Updating python 2 dependency

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• Adding python 2.7 requirement

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• Updating package dependencies

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• Using specific python2 shebang for main executable

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Commits on Jul 17, 2018

• Changing shebang to point to the correct python version

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Commits on Feb 2, 2018

• Corrected order of -Nr parameters

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Commits on Jan 21, 2018

• Version bump to 0.4.6

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• Fixing redundant column in LinearCount output

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Commits on Jan 19, 2018

• Version bump to 0.4.5

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