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Releases: fgcz/prolfqua

Added references to Biorxv article

10 Jun 09:52

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Finally out:
prolfqua: A Comprehensive R-package for Proteomics Differential Expression Analysis

updated CITE and README.md

https://www.biorxiv.org/content/10.1101/2022.06.07.494524v1

Removes dependencies to prolfquadata, MSstats and pROC

08 Jun 14:57

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simplifies installation, and speeds up vignette generation.

Improves inference for missing values

20 May 15:02

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  • Fixes bugs when inferring fold changes for groups of different sizes.
  • Use dataset variance if no variance estimate for protein
  • improvements to plotly volcano

Improved Inferences for missing data

13 Apr 13:15

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The release was created to address issue #29 "Simple Impute".

Changes to column names returned by Contrast clases

05 Apr 09:43

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avgAbd and diff instead of g_1, g_2 or estimate

use prolfqua_0.3.5.tar.gz to install prolfqua

Simplifying Contrast tables

24 Mar 11:24

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Pre-release

remove group_1 and group_2 intensities and report avgAbd instead.

Allow plotting of volcanos without FC threshold

09 Feb 16:19

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cleanup of vignettes, and package imports.

26 Jan 14:01

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  • Removed dependencies on tidyverse and magritter.
  • removed library calls in the vignettes
  • Updates to LFQPlotter heatmap and raster functions.

Update of FragPipe combined protein read function and changes to SAINTexpress application

11 Jan 16:30

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2grp fixed

15 Dec 17:35

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2grp fixed