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Commits on Apr 19, 2018

• Add cancer-type codes to mapping

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  gwaybio

  authored and

  dhimmel

  committed
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Commits on Apr 16, 2018

• Add recurrent solid & metastatic samples

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  dhimmel

  authored
  83db448

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• Retain zero-mutation samples

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  dhimmel

  authored
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Commits on Apr 9, 2018

• Modernize repo: readme updates & LFS

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  dhimmel

  authored
  383668e

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Commits on Apr 8, 2018

• Update Data for April 2018 TCGA PanCanAtlas Data Release (#41)

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  gwaybio

  authored
  3b13a9b

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Commits on Nov 1, 2016

• Dual license repository as BSD & CC0 (#33)

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  dhimmel

  authored
  1d961fb

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Commits on Oct 10, 2016

• Outsource Entrez Gene logic to cognoma/genes (#32)

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  dhimmel

  authored
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Commits on Oct 5, 2016

• Export complete data (#28)

  dhimmel

  authored
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Commits on Sep 29, 2016

• Add disease acronyms and update covariates.tsv (#27)

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  dhimmel

  authored
  b054721

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Commits on Sep 17, 2016

• Encodes categorical covariates from samples dataset. (#24)

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  stephenshank

  authored and

  dhimmel

  committed
  54140cf

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Commits on Sep 7, 2016

• Add exploratory analyses of mutation data (#22)

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  dhimmel

  authored
  67f8032

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Commits on Aug 25, 2016

• Extract sample info from PANCAN_clinicalMatrix (#20)

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  dhimmel

  authored and

  clairemcleod

  committed
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Commits on Aug 23, 2016

• Add figshare link to README (#19)

  dhimmel

  authored
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• Merge pull request #18 from dhimmel/update

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  dhimmel

  authored
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• Sanitize notebook cell numbers, update HiSeqV2

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  dhimmel

  committed
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Commits on Aug 10, 2016

• Map mutation gene symbols to Entrez IDs (#12)

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  clairemcleod

  authored and

  gwaybio

  committed
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Commits on Jul 26, 2016

• Map HiSeqV2 symbols to entrez gene IDs (#8)

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  dhimmel

  authored and

  clairemcleod

  committed
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Commits on Jul 22, 2016

• Merge pull request #7 from dhimmel/process

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  clairemcleod

  authored
  a63c0be

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• Execute notebooks inplace before exporting scripts

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  dhimmel

  committed
  0b5e9d8

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• Update doc /filtering code for duplicate mutations

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  dhimmel

  committed
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• Export notebooks to scripts

  dhimmel

  committed
  44a0b5e

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• Specify only explicit dependencies in environment

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  dhimmel

  committed
  8fb66e9

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• Remove old note on unstandardized mutation types

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  dhimmel

  committed
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Commits on Jul 15, 2016

• Retain all code red & blue mutations

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  dhimmel

  committed
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• Change download URL & store metadata for Xena

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  dhimmel

  committed
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• Use bash for execute script and exit on error

  dhimmel

  committed
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Commits on Jul 14, 2016

• Process TCGA data into sample by gene matrices

  dhimmel

  committed
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• Design data/notebook repo, Download TCGA data

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  dhimmel

  committed
  07eb76b

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• Add BSD 3-Clause License

  dhimmel

  committed
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