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Commits on Oct 17, 2025

• Fixed genome_prediction & merge_filter_windows steps when len(seq_neg) < window_size

  etiennefc

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Commits on Feb 5, 2025

• Fixed snoBIRD output production when no snoRNA is found in input

  etiennefc

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• Added info on snoBIRD version in log and global log mention in readme

  etiennefc

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• Added last filter for predictions with Ns in it

  etiennefc

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• Fixed minus strand arg, pred when input is <=194nt (including padding) and high nb of entries in fasta & proba thresh 0.9 if small input size

  etiennefc

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Commits on Jan 8, 2025

• Added info on workload manager usable with SnoBIRD

  etiennefc

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Commits on Jan 7, 2025

• Fixed tokenerror after line continuation

  etiennefc

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• Added info on about --input_bed and --prob_first_model

  etiennefc

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Commits on Jan 6, 2025

• Fixed start/end window size to 194 nt for bed input

  etiennefc

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Commits on Dec 20, 2024

• Added GPU rule info and logs location

  etiennefc

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• Predict on center window in BED entries > 194 nt

  etiennefc

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Commits on Dec 19, 2024

• Added specifications on empty bed error if path is wrong

  etiennefc

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• Predict on center window in BED entries > 194 nt

  etiennefc

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• Added info in warning on input of multi-fasta gene sequences instead of chr sequences

  etiennefc

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• Added GPU usage warning for bed input

  etiennefc

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• Fixed typo

  

  Étienne Fafard-Couture

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• Added BED as optional input

  etiennefc

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Commits on Dec 9, 2024

• Removed useless spaces in chr names

  etiennefc

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• Removed unwanted spaces in warning messages

  etiennefc

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• Removed unwanted spaces in warning messages

  etiennefc

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• Removed unwanted spaces in warning messages

  etiennefc

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• Removed unwanted spaces in warning messages

  etiennefc

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• Removed unwanted spaces in warning messages

  etiennefc

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• Removed unused line

  etiennefc

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• Changed slurm log names to include rule name

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Commits on Dec 6, 2024

• Removed unused print statements

  etiennefc

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Commits on Dec 5, 2024

• Added warning messages for GPU generation and input fasta w potential unwanted scaffolds

  etiennefc

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Commits on Dec 4, 2024

• Supplemented README for better usage

  etiennefc

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• Fixed dtype for chr w rad_csv (missing predictions in certain chr)

  

  Étienne Fafard-Couture

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Commits on Dec 3, 2024

• Fixed pandas memory issue for step_size=1 (merge ALL predictions)

  

  Étienne Fafard-Couture

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• Remove GPU allocation if step_size=1 for merge_filter_windows

  

  Étienne Fafard-Couture

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• Filtered even more what can be committed

  

  Étienne Fafard-Couture

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Commits on Nov 18, 2024

• Removed unused script

  etiennefc

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• Removed user-specific info

  etiennefc

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• Merge branch 'master' of github.com:etiennefc/snoBIRD

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