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Commits on Mar 31, 2022

• Update aln_scores.py

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Commits on Mar 25, 2022

• clean up code a bit

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Commits on Mar 24, 2022

• remove simde dependency for x86 environments

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• add convenience specialization for convex gap

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• Merge branch 'main' of https://github.com/jeizenga/wfalm

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• remove unused arg

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Commits on Mar 23, 2022

• Update README.md

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• Merge branch 'piecewise'

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• fix stripe index bug in local recursive alignment

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• Merge pull request #3 from jeizenga/piecewise

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• interface tune ups and convenience functions

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• debug piecewise linear

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Commits on Mar 22, 2022

• compiling full implementation of piecewise

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• compiling implementation of template param

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• beginning of template piecewise affine

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Commits on Mar 20, 2022

• bugfix revised match function

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• Merge branch 'simd'

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• optimize simd match function

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Commits on Mar 18, 2022

• Merge pull request #2 from jeizenga/simd

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• Merge remote-tracking branch 'origin/main' into simd

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• vectorized match function

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• debug vectorized wf next

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Commits on Mar 17, 2022

• compiling but un-tested simd-fication of wf_nexst

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• fix stripe sampling bug

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Commits on Mar 13, 2022

• Merge pull request #1 from jeizenga/rwfa

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• update benchmark script

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• add adaptive memory for local alignments

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Commits on Mar 12, 2022

• implement adaptive memory algorithm

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• update st algs to an aligner object

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• refactor as an aligner class

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Commits on Mar 10, 2022

• switch to 0-based indexing

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• implementation of recursive algorithm

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Commits on Feb 28, 2022

• Update README.md

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Commits on Jan 12, 2022

• choose a faster suffix tree

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Commits on Jan 11, 2022

• try different suffix tree impl

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