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Commits on Jun 19, 2018

• Corrections for license / copyright statements.

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Commits on May 24, 2017

• Major (10x) improvement to name encoding speed.

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Commits on May 16, 2017

• Fix to the rANS codec when compressing O1 freq tables.

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Commits on Apr 21, 2017

• Hacks to improve compression.

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Commits on Apr 13, 2017

• Made tok3 which outputs a single stream.

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Commits on Mar 20, 2017

• Experiments into bit packing before/after rans.

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Commits on Mar 17, 2017

• Improvements to storing order-1 frequency table.

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• Minor tweaks to code counting

  jkbonfield

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Commits on Mar 16, 2017

• Favour smaller codes in fib_code.

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• Simple bit-packer.

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• Experimental rle replacements.

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Commits on Mar 13, 2017

• Remove tokenised files as we go to avoid overlong command lines.

  jkbonfield

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• Bug fix for encoding names with prefix matches.

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Commits on Mar 10, 2017

• Delete old code (khash no longer used).

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• Made the default order-1 freq table 11 bits (was 9bit).

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• Fixed bug in block buffer shuffling.

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Commits on Mar 9, 2017

• Make codec work on stdin/stdout without needing a directory layout.

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• Fix RLE encoding when GUARD is not zero.

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• The join codec tool now (un)packs multiple streams.

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• Added a generic multi-codec compression tool to replace try_comp.sh.

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• Debugging removal.

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• Fixed bug in run length encoding.

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Commits on Mar 8, 2017

• Updated tokenise_name2 to work in blocks.

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Commits on Mar 6, 2017

• Tidy up of memory (freeing etc).

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Commits on Mar 3, 2017

• Replaced N_ZERO with N_DIGITS0.

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• Improvements for IonTorrent data.

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• Fixed formatting.

  jkbonfield

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• Added RLE as an entropy encoder in its own right.

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Commits on Mar 1, 2017

• Bug fix for decoder name.

  jkbonfield

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• Improved the evaluation of token compression.

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• Made the implicit <ZERO,0> tokens <MATCH> tokens when useful.

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• New tokeniser specifying which read to tokenise against.

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Commits on Feb 27, 2017

• Make integer tokens a fixed ascii length rather than power of 2.

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Commits on Feb 24, 2017

• Deleted debugging output

  jkbonfield

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• Added N_DUP token.

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