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Tools for fast and flexible genome assembly scaffolding and improvement
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
ATLAS - Three commands to start analyzing your metagenome data
Customizable workflows based on snakemake and python for the analysis of NGS data
A neural network written in Python, consisting of a single neuron that uses back propagation to learn.
An updated pipeline for pangenome investigation
Long read based human genomic structural variation detection with cuteSV
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
Filtering and trimming of long read sequencing data
IdenProf dataset is a collection of images of identifiable professionals. It is been collected to enable the development of AI systems that can serve by identifying people and the nature of their j…
SALSA: A tool to scaffold long read assemblies with Hi-C data
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
Finder of Somatic Fusion Genes in RNA-seq data
Analyze your RNA sequencing data without writing a single line of code
Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
Quality control tools for nanopore sequencing data
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python interface for the RCSB PDB search API.
Converts text into a PDF of handwritten notes
reference-based long read assemblies of bacterial genomes