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  1. xenium2anndata-analysis-workflow xenium2anndata-analysis-workflow Public

    Analysis workflow for 10x Genomics Xenium spatial transcriptomics data. Includes scripts to unpack raw Xenium outputs, convert them into AnnData objects, and perform downstream analyses.

    Jupyter Notebook 1

  2. NGS-scripts-collection NGS-scripts-collection Public

    A collection of scripts for genome analysis and NGS data processing, covering tasks like basecalling and gene annotation.

    Shell

  3. TextMineML TextMineML Public

    TextMineML: End-to-end text mining of UPCH articles, scrapes abstracts, cleans text, builds TF‑IDF/SBERT vectors, UMAP+k‑means/HDBSCAN clusters, and outputs plots/CSVs.

    Jupyter Notebook 2

  4. chalco777/dna_stats_app chalco777/dna_stats_app Public

    Interactive genomics dashboard for quick sequence alignment, phylogenetic tree inference, conservation profiling, motif search, and more—all right in your browser.

    Python 1

  5. benjaminhurbe/250610_esm3 benjaminhurbe/250610_esm3 Public

    Jupyter Notebook 3