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Analysis workflow for 10x Genomics Xenium spatial transcriptomics data. Includes scripts to unpack raw Xenium outputs, convert them into AnnData objects, and perform downstream analyses.
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TextMineML Public
TextMineML: End-to-end text mining of UPCH articles, scrapes abstracts, cleans text, builds TF‑IDF/SBERT vectors, UMAP+k‑means/HDBSCAN clusters, and outputs plots/CSVs.
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NGS-scripts-collection Public
A collection of scripts for genome analysis and NGS data processing, covering tasks like basecalling and gene annotation.
Shell UpdatedDec 24, 2024
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