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dysgu Public
Forked from kcleal/dysguToolkit for calling structural variants using short or long reads
Cython MIT License UpdatedJul 15, 2024 -
LiftOn Public
Forked from Kuanhao-Chao/LiftOn🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
Python GNU General Public License v3.0 UpdatedJul 12, 2024 -
snakemake-interface-executor-plugins Public
Forked from snakemake/snakemake-interface-executor-pluginsThis package provides a stable interface for interactions between Snakemake and its executor plugins.
Python MIT License UpdatedJul 4, 2024 -
bash_kernel Public
Forked from takluyver/bash_kernelA bash kernel for IPython
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 27, 2024 -
Augustus Public
Forked from Gaius-Augustus/AugustusGenome annotation with AUGUSTUS
C++ UpdatedMay 31, 2024 -
seqhax Public
Small sequence analysis tools that don't deserve their own repos.
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snakemake Public
Forked from snakemake/snakemakeThis is the development home of the workflow management system Snakemake. For general information, see
Python MIT License UpdatedFeb 7, 2024 -
snakemake-executor-plugin-slurm Public
Forked from snakemake/snakemake-executor-plugin-slurmA Snakemake executor plugin for submitting jobs to a SLURM cluster
Python MIT License UpdatedJan 29, 2024 -
conda-pkgs Public
My conda packages. mamba install -c kdm801 $PGK to install
Shell Creative Commons Zero v1.0 Universal UpdatedJan 18, 2024 -
borg Public
Forked from borgbackup/borgDeduplicating archiver with compression and authenticated encryption.
Python Other UpdatedJan 6, 2024 -
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markdown-lightbox2 Public
Forked from stlehmann/markdown-lightboxextension for python markdown to lightbox images
CSS MIT License UpdatedDec 15, 2023 -
pggb Public
Forked from pangenome/pggbthe pangenome graph builder
Shell MIT License UpdatedNov 21, 2023 -
odgi Public
Forked from pangenome/odgiOptimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
C++ MIT License UpdatedNov 18, 2023 -
SQANTI3 Public
Forked from ConesaLab/SQANTI3Tool for the Quality Control of Long-Read Defined Transcriptomes
HTML GNU General Public License v3.0 UpdatedNov 10, 2023 -
radhax Public
Scripts for analysis of reduced-representation sequencing (GBS, RADseq)
Python GNU General Public License v3.0 UpdatedOct 28, 2023 -
plassembler Public
Forked from gbouras13/plassemblerProgram to quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates
Python MIT License UpdatedOct 24, 2023 -
miniprothint Public
Forked from tomasbruna/miniprothintMiniprothint selects a set of reliable gene prediction hints from miniprot alignments scored by miniprot boundary scorer.
Python Other UpdatedSep 15, 2023 -
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MetaPhlAn Public
Forked from biobakery/MetaPhlAnMetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
Python MIT License UpdatedJul 15, 2023 -
diamond Public
Forked from bbuchfink/diamondAccelerated BLAST compatible local sequence aligner.
C++ GNU General Public License v3.0 UpdatedJul 13, 2023 -
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AGAT Public
Forked from NBISweden/AGATAnother Gtf/Gff Analysis Toolkit
Perl GNU General Public License v3.0 UpdatedJun 23, 2023 -
sam2lca Public
Forked from maxibor/sam2lcaLowest Common Ancestor from a SAM/BAM/CRAM alignment file
Python GNU General Public License v3.0 UpdatedMay 17, 2023 -
python-rocksdb-feedstock Public
Forked from conda-forge/python-rocksdb-feedstockA conda-smithy repository for python-rocksdb.
BSD 3-Clause "New" or "Revised" License UpdatedApr 27, 2023 -
vcf2gwas Public
Forked from frankvogt/vcf2gwasPython API for comprehensive GWAS analysis using GEMMA
Python GNU General Public License v3.0 UpdatedApr 12, 2023 -
miniprot Public
Forked from lh3/miniprotAlign proteins to genomes with splicing and frameshift
C MIT License UpdatedApr 11, 2023 -
csvtk Public
Forked from shenwei356/csvtkA cross-platform, efficient and practical CSV/TSV toolkit in Golang
Go MIT License UpdatedMar 21, 2023
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