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docker_compose_example Public
Quick docker compose example with API gateway, 2 public-facing services, redis on the back end, and logstash logging
Python Apache License 2.0 UpdatedSep 7, 2018 -
go-model-service Public
Forked from CanDIG/go-model-serviceA model variant service demonstarting CanDIG API best practices and stack/tooling.
Go GNU Lesser General Public License v2.1 UpdatedSep 4, 2018 -
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graphql-wrap-test Public
Quick test of wrapping GA4GH genomics APIs with GraphQL
Python UpdatedMay 10, 2018 -
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IACS-SBU-2018 Public
"HPC, Big Data, and Large Scale Genomics"
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cwl-tutorial Public
Forked from screx/cwl-tutorialThis is a tutorial for Common Workflow Language (CWL)
Common Workflow Language UpdatedMar 6, 2018 -
make_pattern_rules Public
Tutorial for using Makefile pattern rules
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ga4gh-server Public
Forked from CanDIG/candig-serverA reference implementation of the APIs defined in the schemas repository.
Python Apache License 2.0 UpdatedDec 22, 2017 -
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profyle_ingest_docker Public
Docker for https://github.com/CanDIG/PROFYLE_ingest
Shell UpdatedNov 16, 2017 -
dask-sparse-mtx Public
A simple demonstration of using dask tasks to multiple sparse matrices stored in a file
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julia_v_chapel Public
Simple test cases comparing julia and chapel
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chapel Public
Forked from chapel-lang/chapela Productive Parallel Programming Language
Chapel Other UpdatedJun 20, 2017 -
CHIUW2017 Public
Keynote talk for CHIUW2017
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ga4gh_directory Public
A simple docker for firing up a GA4GH reference server from a directory of BAMs and VCFs
Shell UpdatedMay 31, 2017 -
ga4gh_directory_singularity Public
First pass at a singularity version of the ga4gh server
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consensus_call_docker Public
Make PCAWG consensus calls given input VCFs
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ga4gh-demo-notebook Public
Demonstration notebook for ga4gh
Jupyter Notebook GNU General Public License v3.0 UpdatedNov 2, 2016 -
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glbio-jupyter-workshop Public
Instructions and files for #GLBIOCCBC16 Workshop 2, "Jupyter Notebooks for Performing and Sharing Bioinformatics Analyses"
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simple-synthetic-somatic Public
Very simple synthetic somatic read/call generator for testing mechanics of pipelines
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