Name		Name	Last commit message	Last commit date
parent directory ..
fixtures		fixtures
ReadMe.md		ReadMe.md
__init__.py		__init__.py
fixtures.py		fixtures.py
from_json.py		from_json.py
pytest_results_py3.12.txt		pytest_results_py3.12.txt
test_8cube.py		test_8cube.py
test_archs4.py		test_archs4.py
test_bgee.py		test_bgee.py
test_blast.py		test_blast.py
test_blat.py		test_blat.py
test_cbio.py		test_cbio.py
test_cellxgene.py		test_cellxgene.py
test_compile.py		test_compile.py
test_cosmic.py		test_cosmic.py
test_diamond.py		test_diamond.py
test_elm.py		test_elm.py
test_enrichr.py		test_enrichr.py
test_gpt.py		test_gpt.py
test_info.py		test_info.py
test_muscle.py		test_muscle.py
test_mutate.py		test_mutate.py
test_opentargets.py		test_opentargets.py
test_pdb.py		test_pdb.py
test_ref.py		test_ref.py
test_search.py		test_search.py
test_seq.py		test_seq.py
test_utils.py		test_utils.py
test_virus.py		test_virus.py

ReadMe.md

Testing structure

Functions for each test type are defined in from_json.py, which are called in the individual <module>.py files.

Arguments, expected results, and test type are defined for each module in the <module>.json dictionaries in /fixtures.

Run tests locally using coverage run -m pytest -ra -v tests && coverage report --omit=main.py,tests*