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bugan unexpected problem or unintended behavioran unexpected problem or unintended behavior
Description
Similar to #726, on a machine where Bioconductor is inaccessible, and using version 0.9.0 of pak
pak::repo_status(bioc = FALSE)gives
Error:
! error in pak subprocess
Caused by error in `download.file(url, tmp, quiet = TRUE)`:
! cannot open URL 'http://bioconductor.org/config.yaml'
Type .Last.error to see the more details.
and .Last.error says
<callr_error/rlib_error_3_0/rlib_error/error>
Error:
! error in pak subprocess
Caused by error in `download.file(url, tmp, quiet = TRUE)`:
! cannot open URL 'http://bioconductor.org/config.yaml'
---
Backtrace:
1. pak::repo_status(bioc = FALSE)
2. pak:::remote(function(...) asNamespace("pak")$repo_status_internal(...), …
3. err$throw(res$error)
---
Subprocess backtrace:
1. base::withCallingHandlers(cli_message = function(msg) { …
2. asNamespace("pak")$repo_status_internal(...)
3. pkgcache::repo_status(platforms = platforms, r_version = r_version, …
4. pkgcache:::synchronise(async_repo_status(platforms, r_version, bioc, cran_mirror))
5. pkgcache:::async_repo_status(platforms, r_version, bioc, cran_mirror)
6. pkgcache:::cmc__get_repos(getOption("repos"), bioc, cran_mirror, r_version)
7. bioconductor$get_repos()
8. local get_bioc_version(getRversion(), forget)
9. local get_matching_bioc_version(r_version, forget = forget)
10. local get_version_map(forget = forget)
11. local get_yaml_config(forget)
12. base::stop(new)
13. global (function (e) …
I tried setting these but got the same result.
options(pkg.use_bioconductor = FALSE)
Sys.setenv(PKG_USE_BIOCONDUCTOR = "FALSE")Thank you for considering.
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bugan unexpected problem or unintended behavioran unexpected problem or unintended behavior