Add doPhasing option to the STITCH.R script #66
Annotations
27 warnings and 2 notices
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macos-latest (release)
File ‘STITCH/libs/STITCH.so’:
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macos-latest (release)
Found the following file(s) containing GNU extensions:
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macos-latest (release)
Non-portable flags in variable 'PKG_CPPFLAGS':
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macos-latest (release)
Undocumented arguments in Rd file 'STITCH.Rd'
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macos-latest (release)
Codoc mismatches from Rd file 'STITCH.Rd':
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macos-latest (release)
Undocumented code objects:
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ubuntu-latest (devel)
File ‘STITCH/libs/STITCH.so’:
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ubuntu-latest (devel)
Found the following file(s) containing GNU extensions:
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ubuntu-latest (devel)
Non-portable flags in variable 'PKG_CPPFLAGS':
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ubuntu-latest (devel)
Undocumented arguments in Rd file 'STITCH.Rd'
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ubuntu-latest (devel)
Codoc mismatches from Rd file 'STITCH.Rd':
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ubuntu-latest (devel)
Undocumented code objects:
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ubuntu-latest (release)
File ‘STITCH/libs/STITCH.so’:
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ubuntu-latest (release)
Found the following file(s) containing GNU extensions:
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ubuntu-latest (release)
Non-portable flags in variable 'PKG_CPPFLAGS':
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ubuntu-latest (release)
Undocumented arguments in Rd file 'STITCH.Rd'
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ubuntu-latest (release)
Codoc mismatches from Rd file 'STITCH.Rd':
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ubuntu-latest (release)
Undocumented code objects:
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windows-latest (release)
File 'STITCH/libs/x64/STITCH.dll':
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windows-latest (release)
Found the following file(s) containing GNU extensions:
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windows-latest (release)
Non-portable flags in variable 'PKG_CPPFLAGS':
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windows-latest (release)
Undocumented arguments in Rd file 'STITCH.Rd'
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windows-latest (release)
Codoc mismatches from Rd file 'STITCH.Rd':
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windows-latest (release)
Undocumented code objects:
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windows-latest (release)
file 'STITCH/src/htslib-1.21/configure' did not have execute permissions: corrected
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windows-latest (release)
file 'STITCH/configure' did not have execute permissions: corrected
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windows-latest (release)
file 'STITCH/cleanup' did not have execute permissions: corrected
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macos-latest (release)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
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macos-latest (release)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
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