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gotoh Public
Aligns two sequences and returns the number of characters which match, mismatch, open gaps or extend gaps.
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CopticScriptorium-corpora Public
Forked from CopticScriptorium/corporaPublic repository for Coptic SCRIPTORIUM Corpora Releases
CSS UpdatedMar 12, 2025 -
orthoflow Public
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
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django-imagedeck Public
A package to seamlessly group different sorts of images into groups
Python Apache License 2.0 UpdatedFeb 11, 2025 -
dcodex_collation Public
Dcodex app to handle alignment of texts.
Python Apache License 2.0 UpdatedFeb 11, 2025 -
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django-publications Public
A fork of django-publications by Lucas Theis. A Django app for managing scientific publications
Python MIT License UpdatedJan 13, 2025 -
django_partial_date Public
Forked from ktowen/django_partial_dateDjango custom model field for partial dates with the form YYYY, YYYY-MM, YYYY-MM-DD
Python MIT License UpdatedJan 13, 2025 -
introchain Public
Workshop material for `Large Language Model (LLM) pipelines using LangChain` at the AMSI BioInfoSummer 2024.
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seqbank Public
SeqBank is a powerful and flexible command-line application designed to simplify the management and processing of large DNA sequence datasets. Whether you're working with local sequence files, retr…
Python UpdatedDec 2, 2024 -
cov3d Public
A deep learning model to detect the presence and severity of COVID19 in patients from CT-scans.
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ausdex Public
A Python package for adjusting Australian dollars for inflation
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bayespub Public
Using LLMs to infer trends in Bayesian analysis in academic literature
Python UpdatedNov 21, 2023 -
django-crunch Public
A data processing orcestration tool
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BioKIT Public
Forked from JLSteenwyk/BioKITa versatile toolkit for processing and analyzing diverse types of sequence data
Python MIT License UpdatedOct 19, 2023 -
thesis_data Public
The data to accompany Robert Turnbull's PhD thesis on Codex Sinaiticus Arabicus and its Family
TeX Other UpdatedJul 31, 2023 -
framecat Public
Identifies frame catena from manuscript images
Python Apache License 2.0 UpdatedMay 16, 2023 -
snakemake Public
Forked from snakemake/snakemakeRob Turnbull's fork of Snakemake to add citation management.
HTML MIT License UpdatedApr 24, 2023 -
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lungmask Public
Forked from JoHof/lungmaskAutomated lung segmentation in CT
Python Apache License 2.0 UpdatedJan 4, 2023 -
pytricubic Public
Forked from danielguterding/pytricubicTricubic interpolation module for Python.
C++ MIT License UpdatedSep 17, 2022 -
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fastapp Public
A wrapper for fastai projects to create easy command-line inferfaces and manage hyper-parameter tuning
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dcodex-cookiecutter Public
Forked from cookiecutter/cookiecutter-djangoCookiecutter Django is a framework for jumpstarting production-ready Django projects quickly.
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 19, 2022 -
pybtexnbib Public
A pybtex plugin for NBIB/Medline/PubMed files
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pybtexris Public
A pybtex plugin for inputting and outputting RIS files
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toytree Public
Forked from eaton-lab/toytreeA minimalist tree plotting library using toyplot graphs
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 23, 2022 -
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sphinx-click Public
Forked from click-contrib/sphinx-clickA Sphinx plugin to automatically document click-based applications
Python MIT License UpdatedMar 16, 2022 -
iiif-prezi3 Public
Forked from iiif-prezi/iiif-prezi3IIIF Presentation API 3 Python Library
Python Apache License 2.0 UpdatedNov 28, 2021
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