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Description
Hello
I installed PyDSTool on Windows 10 with 64 bits.
I have Anaconda3/64-bit and Python 3.7.
PyDSTool installation was done using pip:
pip install git+https://github.com/robclewley/pydstool.git
Before installing PyDSTool, I installed SWIG and C and Fortran compilers using conda:
conda install -c anaconda swig
conda install -c conda-forge c-compiler
conda install -c conda-forge clang
conda install -c conda-forge python-clang
conda install -c msys2 m2w64-gcc-objc
conda install -c conda-forge fortran-compiler
I ran the following subset of “all” tests to do initial check of PyDSTool:
Basic PyDSTool modules
Map generators
ODE integration with vode, no external compiler needed
Parameter estimation module
Parameter estimation, requires external C compiler
Symbolic differentiation module
Continuation; no external compilers needed
The following tests failed:
Basic PyDSTool modules:
- traj_gt0_test.py
ODE integration with vode, no external compiler needed
- HH_model_testbounds.py
Parameter estimation, requires external C compiler
- pest_test3_Cintegrator.py
- pest_test4_Cintegrator.py
Continuation; no external compilers needed
- PyCont_ABCReaction.py
- PyCont_Hopfield.py
- PyCont_Logistic.py
- PyCont_SaddleNode.py
Note that tests PyCont_ABCReaction.py and PyCont_Hopfield.py sometimes fail and sometimes don't. They didn't fail after computer reboot.
Attached file contains more details on error messages for each test.