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PyDSTool doesn't fully run on Windows 10 with 64 bits #160

@alex-51

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@alex-51

Hello

I installed PyDSTool on Windows 10 with 64 bits.
I have Anaconda3/64-bit and Python 3.7.

PyDSTool installation was done using pip:
pip install git+https://github.com/robclewley/pydstool.git

Before installing PyDSTool, I installed SWIG and C and Fortran compilers using conda:

conda install -c anaconda swig
conda install -c conda-forge c-compiler
conda install -c conda-forge clang
conda install -c conda-forge python-clang
conda install -c msys2 m2w64-gcc-objc
conda install -c conda-forge fortran-compiler

I ran the following subset of “all” tests to do initial check of PyDSTool:
Basic PyDSTool modules
Map generators
ODE integration with vode, no external compiler needed
Parameter estimation module
Parameter estimation, requires external C compiler
Symbolic differentiation module
Continuation; no external compilers needed

The following tests failed:

Basic PyDSTool modules:

  • traj_gt0_test.py

ODE integration with vode, no external compiler needed

  • HH_model_testbounds.py

Parameter estimation, requires external C compiler

  • pest_test3_Cintegrator.py
  • pest_test4_Cintegrator.py

Continuation; no external compilers needed

  • PyCont_ABCReaction.py
  • PyCont_Hopfield.py
  • PyCont_Logistic.py
  • PyCont_SaddleNode.py

Note that tests PyCont_ABCReaction.py and PyCont_Hopfield.py sometimes fail and sometimes don't. They didn't fail after computer reboot.

Attached file contains more details on error messages for each test.

PyDSTool_issues_v2.docx

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