PLM based active learning model for protein engineering

BWT construction and search

This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.

Official repository for the Boltz biomolecular interaction models

Bioinformatics I/O libraries in Rust

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

Tools (written in C using htslib) for manipulating next-generation sequencing data

C library for high-throughput sequencing data formats

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

cython + htslib == fast VCF and BCF processing

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…

RTG Tools: Utilities for accurate VCF comparison and manipulation

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Integrate Any Omics: Towards genome-wide data integration for patient stratification

DuckDB Extension for working with bioinformatic data.

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

Let LLM run your MDs.