Banded Striped DNA Sequence Alignment

Generate unique KMERs for every contig in a FASTA file

10x Genomics Reads Simulator

An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.

BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions

GENIE3 (GEne Network Inference with Ensemble of trees) R-package

efficient alignment of strings to partially ordered string graphs

Genotype and phase short tandem repeats using Illumina whole-genome sequencing data

Human pan-genome analysis pipeline

A Hi-C scaffolding method

Phasing reads with secondary alignments

A high-performance search engine for large-scale genomic interval datasets

Simple tools for working with Hi-C data

Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences

Simultaneous multi-sample transcript assembler for RNA-seq data

IBD based kinship estimation

TreeBeST: Tree Building guided by Species Tree

A program written in C that can perform genomic scans for recent selective sweeps selection while controlling for background selection and mutation rate variation (DeGiorgio et al. 2016).

An NGS SV caller based on pan-genome

Pipe Viewer - monitor the progress of data through a pipe. mirror of https://codeberg.org/a-j-wood/pv