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iqtree

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NIGMS / Population-Genomics-and-Phylogenetics-with-RADseq

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This repository provides a comprehensive tutorial for phylogenetic analysis, covering data collection, sequence alignment, tree construction, and interpretation. It runs on AWS SageMaker using Jupyter notebooks and includes tools like MAFFT, Nextclade, and IQ-TREE.

python bioinformatics gcp computational-biology phylogenetic-trees phylogenetics population-genetics high-throughput-sequencing genome-assembly r-programming radseq ipyrad ddrad-seq iqtree phylogenetic-inference
  • Updated Jun 6, 2025
  • Jupyter Notebook

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