🧬 gget enables efficient querying of genomic reference databases

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

local query the ncbi taxonomy

This Python script retrieve all children organism under an ancestor in NCBI taxonomy.

ClinVar Submission API Made Easy

Web application to fetch and compare genome assembly stats from the NCBI Datasets API

`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports

Research about HBB gene for the Bioinformatics Laboratories class. Second Semester of the First Year of the Bachelor's Degree in Bioinformatics at FCUP.

multiprocessed ncbi edirect

Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course

Metagenomic toolbox / Outils de métagénomique

This Python script automates the process of retrieving first author affiliations for academic publications using the NCBI E-utilities API. It processes a CSV file containing DOIs (Digital Object Identifiers) and fetches the corresponding first author affiliations from PubMed.

ncbi-cli is a tool to connect to NCBI' s ftp server and get some info about genomes you specify.

Perl script to download genomes within a clade from NCBI Refseq

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

This python script detects known traits in raw human genetic data.

ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective

Makefile (of all things) to space-efficiently mirror selected NCBI resources