Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
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Updated
Nov 25, 2024 - Nextflow
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proteogenomics
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Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
workflow
pipeline
nextflow
proteomics
dia
mass-spectrometry
openms
proteogenomics
tmt
nf-core
mass-spec
lfq
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Updated
May 6, 2024 - Nextflow
NeoFlow: a proteogenomics pipeline for neoantigen discovery
proteogenomics
nextflow-pipeline
neoantigen-prediction
novel-peptide-identifications
neoantigen-discovery
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Updated
Nov 16, 2024 - Nextflow
The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
workflow
pipeline
nextflow
proteomics
cosmic
proteogenomics
nf-core
protein-databases
gnomad
pypgatk
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Updated
May 9, 2024 - Nextflow
ProteomeGenomics Database Creation - Nextflow Pipeline
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Updated
Jun 22, 2022 - Nextflow
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