Search results

Is there a way to obtain the unfiltered peptide list

Status: Open.

#624 In bigbio/quantms;

· PernilleTJensen opened on Dec 12, 2025

AWS and quantms-rescoring, download - with no internet access

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

high-priority

Status: Open.

#622 In bigbio/quantms;

· ypriverol opened on Dec 4, 2025

Conform with upcoming big nf-core requirements

enhancementNew feature or requestNew feature or request

low-priority

Status: Open.

#607 In bigbio/quantms;

· jpfeuffer opened on Nov 3, 2025

Support newer MSStats spinoffs

Status: Open.

#606 In bigbio/quantms;

· jpfeuffer opened on Nov 3, 2025

Add protein quantification

enhancementNew feature or requestNew feature or request

Status: Open.

#592 In bigbio/quantms;

· enryH opened on Oct 21, 2025

Layout how parameters are combined

enhancementNew feature or requestNew feature or request

Status: Open.

#591 In bigbio/quantms;

· enryH opened on Oct 21, 2025

[FEATURE] Print useful help messages for typos in CLI arguments

enhancementNew feature or requestNew feature or request

Status: Open.

#587 In bigbio/quantms;

· fabianegli opened on Sep 26, 2025

The sdrf file check for 'sdrf' in the filename seems arbitrary

Status: Open.

#585 In bigbio/quantms;

· fabianegli opened on Sep 25, 2025

[FEATURE] Better error message when running quantms with no input

enhancementNew feature or requestNew feature or request

Status: Open.

#584 In bigbio/quantms;

· fabianegli opened on Sep 25, 2025

Pipeline fails due to file errors - missing files

Status: Open.

#582 In bigbio/quantms;

· barkdaron opened on Sep 11, 2025

Error in the msstats_tmt.R function parse_contrasts

bugSomething isn't workingSomething isn't working

Status: Open.

#577 In bigbio/quantms;

· kai-lawsonmcdowall opened on Aug 20, 2025

quantms.io protein groups representation.

enhancementNew feature or requestNew feature or request

high-priority

Status: Open.

Feature

#559 In bigbio/quantms;

· ypriverol opened on Jun 4, 2025