Personal template for making and describing how to do reproducible NBIS support projects
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Updated
Jul 19, 2024 - Nextflow
Quarto is an open source scientific and technical publishing system. Built on pandoc, it allows for the creation of reports, documents, websites, blogs, presentations, books, and articles in a variety of formats.
Quarto is supported by several coding tools, including JupyterLab, VS Code, and Neovim, as well as other text editors. It also has a powerful visual editor for pandoc Markdown. The output can be modified and extended via extensions, and Quarto supports the creation of custom extensions.
A variety of publication options are available, including Quarto Pub and GitHub Pages.
Personal template for making and describing how to do reproducible NBIS support projects
nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.
A demonstration of how to work reproducibly using version control, containers, and a workflow manager.