Merge pull request #159 from viralemergence/fix/deposits_400 #135

	name: Compile virion targets

	# Controls when the action will run.
	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main
	# run once a week - - github servers often get a lot of requests on the hour and may fail silently
	schedule:
	- cron: "21 0 * * 2"
	workflow_dispatch:
	jobs:
	targets:
	runs-on: ubuntu-latest
	container:
	image: rocker/verse:4.5.0
	env:
	ZENODO_TOKEN: ${{ secrets.ZENODO_TOKEN }}
	ZENODO_SANDBOX_TOKEN: ${{ secrets.ZENODO_SANDBOX_TOKEN }}
	steps:
	- name: update permissions for container based workflows
	run: git config --global --add safe.directory /__w/virion/virion
	- uses: actions/checkout@v4 # https://github.com/actions/checkout
	- name: Install system dependencies
	run: \|
	sh sys_deps/sys_deps.sh
	- name: Install packages from renv.lock (with cache)
	if: ${{ !env.ACT }} ## Doesn't work locally with ACT
	uses: r-lib/actions/setup-renv@v2
	with:
	cache-version: 4
	- name: Install packages from renv.lock (local, no cache)
	if: ${{ env.ACT }} ## Only locally with ACT, use `act -r` to reuse containers, effectively caching locally
	run: \|
	renv::restore()
	shell: Rscript {0}
	- name: Install Juliaup
	uses: julia-actions/install-juliaup@v2
	with:
	channel: 'lts'
	- name: get path
	run: \|
	echo $PATH
	- name: Run targets workflow in CI
	if: ${{ !env.ACT }}
	run: \|
	targets::tar_make()
	shell: Rscript {0}
	- name: Run targets workflow local with ACT
	if: ${{ env.ACT }}
	run: \|
	targets::tar_make()
	shell: Rscript {0}

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