AlphaGenome PyTorch port

AI agents running research on single-GPU nanochat training automatically

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Blog page for the Genomics x AI community

The official repository for the ARSENAL model

Research code accompanying AlphaGenome

Ongoing Project on Noise-Resistant DNNs for CRE Expression Prediction - Cold Spring Harbor Laboratory

Code to train and evaluate DREAM-RNN models on lentiMPRA data

The agent engineering platform.

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

PyTorch implementation of Basenji2.

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

The best ChatGPT that $100 can buy.

Linear Mode Connectivity in Multitask and Continual Learning: https://arxiv.org/abs/2010.04495

25e Programming Bootcamp Materials - Python, Bash, R, and Bioinformatics exercises

Compare neural networks by their feature similarity

Data-efficient Training of Machine Learning Models

xDecoder unlocks the potential of foundation models for few-shot personal gene expression prediction

Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.

CL-Gym: Full-Featured PyTorch Library for Continual Learning

A lightweight reimplementation of some of the algorithms in the MEME suite in Python.

Official PyTorch implementation of "Dataset Condensation via Efficient Synthetic-Data Parameterization" (ICML'22)