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A protocol for event-level logging of clinical AI.

Python 16 1 Updated Jun 11, 2026

How Post-Training Shapes Biological Reasoning Models

Jupyter Notebook 3 Updated Jun 16, 2026

ATHENA-R1: AI agent for treatment reasoning over a biomedical tool universe

Python 2 Updated Jun 16, 2026

[ICML 2026] ARTIST: Adaptive Time Series Reasoning via Segment Selection

Python 1 Updated May 30, 2026

Evaluating Relational Reasoning in LLMs with REL

Python 2 Updated May 25, 2026

AutoScientists: Self-Organizing Agent Teams for Long-Running Scientific Experimentation

Python 653 103 Updated May 28, 2026

Autonomous Knowledge Graph Exploration with Adaptive Breadth-Depth Retrieval

Jupyter Notebook 8 1 Updated Apr 18, 2026

A modern multimodal knowledge graph with type-specific metadata across biomedical domains.

Python 85 9 Updated Jun 16, 2026

Qworld: Question-Specific Evaluation Criteria for LLMs

Python 27 4 Updated Mar 26, 2026

Terminal based chat implementation of ARK agent

TypeScript 13 6 Updated Mar 12, 2026

Act or Defer: Error-Controlled Decision Policies for Medical Foundation Models

Python 11 3 Updated Mar 2, 2026

Medea: An omics AI agent for therapeutic discovery

Python 110 20 Updated Mar 26, 2026

Environment for developing substructure-aware protein models

Jupyter Notebook 16 1 Updated Mar 26, 2026

Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systems

Jupyter Notebook 29 14 Updated Dec 27, 2025

Precision Medicine Knowledge Graph (PrimeKG)

Jupyter Notebook 778 152 Updated May 27, 2024

A unified multi-task time series model.

Python 640 98 Updated Sep 26, 2024

ProCyon: A multimodal foundation model for protein phenotypes

Python 60 15 Updated Nov 25, 2025

Geometric Byte Pair Encoding of Protein Structure (ICLR 2026)

Python 29 4 Updated Mar 29, 2026

CONCERT predicts niche-aware perturbation responses in spatial transcriptomics

Jupyter Notebook 24 3 Updated Nov 13, 2025

ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine

Jupyter Notebook 94 15 Updated Apr 22, 2026

Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks

Jupyter Notebook 128 31 Updated Oct 3, 2025

Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data

Jupyter Notebook 43 9 Updated Jul 31, 2025

CUREBench @ NeurIPS 2025: Benchmarking AI reasoning for therapeutic decision-making at scale

Python 132 30 Updated Dec 6, 2025

[ICML'25] MedTok: Multimodal Medical Code Tokenizer

Python 46 3 Updated Jul 20, 2025

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

Jupyter Notebook 1,255 216 Updated Jul 13, 2025

Web Companion for Generalizable AI predicts immunotherapy outcomes across cancers and treatments

Jupyter Notebook 6 2 Updated Oct 5, 2025

Generalizable AI predicts immunotherapy outcomes across cancers and treatments

Jupyter Notebook 85 12 Updated May 19, 2026

Learning Universal Representations of Intermolecular Interactions with ATOMICA

Python 224 31 Updated Apr 13, 2026

TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Tools

Python 633 103 Updated Jul 30, 2025

Democratizing AI scientists with ToolUniverse

Python 1,469 227 Updated Jun 18, 2026
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