A KMER-based genome-wIde Assocation testing approach on polyploids

Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and integration of genomic annotations. It is based on a robust…

BRAKER re-implemented with snakemake

An extensible and performant aligner and read mapper

De novo clustering of long transcript reads into genes

GapSuite is a platform for gap filling.

A deep learning gap filling method for plant genomes

Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.

Fast genomics quality control tools for sequencing data, written in Rust.

RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis

Pyranges: a Python framework for ultrafast sequence interval operations

profiler desktop versions

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Create and annotate Alternative Splicing aware Gene Regulatory Networks

k-mer-based non-Bayesian Taxonomic Classifier

Pairwise whole genome aligner

Want to make a neighbourhood-scale synteny plot? Have too many genomic neighbourhoods? SyntenyQC may help!

GWAS and rare variants tests at high speed using regenie

WDL pipelines for running regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

Benchmarking results of GFFx, compared with other commonly-used tools

genotype Structural Variants Using Pre-Phased Reads

A alignment with visualization program for windows.

A filter algorithm with program to filter an alignment or mapping file