DIYbiosphere is an open-source project to collect Do-it-Yourself Biology (DIYbio) initiatives from all over the world

Python for Genomic Data Science 2015 Coursera from Johns Hopkins University

RNA-seq aligner

NGS Pipelines for Preprocessing RNA-seq, Whole Genome Sequencing and Exome-seq, and miRNA-Seq Data

The snakemake workflow for whole-exome sequencing analysis and generating vcf files

whole exome sequencing analysis pipeline

Benchmarking of aligners and variant callers for Whole Exome Sequencing data

workflow to analysis of whole-exome-sequencing

Platypus Variant Caller

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Read trimming tool for Illumina NGS data.

Whole Genome Sequencing analysis, WGS analysis

In this workshop we will go through the basics of single cell RNA-seq analysis (scRNA-seq).

Description of basic workflow for RNA-Seq analysis

Scripts for analysis of RNA-seq data

This guidebook aims to demonstrate the RNA-seq analysis pipeline and the basics statistical analysis behind Differential Gene expression detection

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

Official code repository for GATK versions 4 and up