Starred repositories
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
An efficient CLI to extract sequences from the SRA
Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
Scripts, information and data for publication in APPS.
👻 Ghostty is a fast, feature-rich, and cross-platform terminal emulator that uses platform-native UI and GPU acceleration.
Reference implementations of minimizer schemes to go with the mod-minimizers paper.
A mathematically characterized hypothesis test for organism presence/absence in a metagenome
Here we describe an extension of MinHash that permits accurate compositional analysis of metagenomes with low memory and disk requirements.
fast, multithreaded sourmash operations: search, compare, and gather.
Searching large collections of sequencing data with genome-scale queries
Building the compacted de Bruijn graph efficiently from references or reads.
A Rust library for building modular, fast and compact indexes over genomic data
Command line scientific data management tool
Wake On Lan over the internet without port forwarding
Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.
A repo to track the progress of Python on WebAssembly (WASM)
A conda-smithy repository for sourmash-minimal.
A fast and memory-limited landmask based on GSHHG and OpenStreetMap for determing whether a point on Earth is on land or in the ocean.
Benchmarking pairwise aligners
Mapping sequencing data to De Bruijn graphs, fast