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vg giraffe is slow when mapping reads and doesn't utilize multithreading for GAM output

Status: Open.

#4931 In vgteam/vg;

· jikhashkya opened on Jun 12, 2026

Add a way to control where the explanation directories go from the command line

Status: Open.

#4925 In vgteam/vg;

· adamnovak opened on Jun 9, 2026

People want to add tags to SAM read groups, and think they can be included in --read-group, but they can't

Status: Open.

#4924 In vgteam/vg;

· adamnovak opened on Jun 9, 2026

vg filter has a extension check preventing -M to work, and --tsv-out doesn't work on .gamp file

Status: Open.

#4922 In vgteam/vg;

· MarionPerrier opened on Jun 5, 2026

Unexpected memory growth and empty output when mapping short RNA-seq reads to a pantranscriptome using mpmap

Status: Open.

#4919 In vgteam/vg;

· mt1022 opened on Jun 2, 2026

Is it possible to reduce/minimize haplotype/path switching in vg giraffe mappings?

Status: Open.

#4917 In vgteam/vg;

· Sorcery229 opened on May 28, 2026

vg giraffe will take bad tail alignments that probably should've been softclipped

Status: Open.

#4905 In vgteam/vg;

· faithokamoto opened on May 13, 2026

Release vg v1.75.0

Status: Open.

#4894 In vgteam/vg;

· adamnovak opened on May 4, 2026

·  

v1.75.0

Soft clipping with surject

Status: Open.

#4892 In vgteam/vg;

· schorlton-bugseq opened on May 2, 2026

Add a test for extremely long CIGARs in surject BAM output

Status: Open.

#4890 In vgteam/vg;

· adamnovak opened on Apr 28, 2026

Remove logic we no longer need for handling GFA input specially

Status: Open.

#4880 In vgteam/vg;

· adamnovak opened on Apr 21, 2026

terminate called after throwing an instance of 'std::runtime_error' what(): io::MessageEmitter::write: message too large

Status: Open.

#4878 In vgteam/vg;

· yanyew opened on Apr 16, 2026