3.2. Chemistry—Synthesis and Characterization Data
2,3;4,5-di-O-isopropylidene-1-O-tosyl-β-D-fructopyranose (4): To an oven-dried vial was added 2,3;4,5-di-O-isopropylidene-β-D-fructopyranose (1.001 g, 3.85 mmol, 1.0 eq), p-toluenesulfonyl chloride (2.231 g, 11.70 mmol, 3.0 eq), and 4-(dimethylamino)pyridine (462.5 mg, 3.79 mmol, 1.0 eq). The reagents were then dissolved in 8 mL anhydrous CHCl3. Triethylamine (1.07 mL, 7.68 mmol, 2.0 eq) was added to the solution, which was then stirred at room temperature for 48 h. The reaction solution was then diluted with 30 mL DCM and washed with 30 mL portions of H2O, saturated NH4Cl, and brine. The solvent was removed via rotovap to afford a crude red oil. The crude material was then dry loaded onto silica gel and purified via automated flash column chromatography using a gradient of 0–25% EtOAc in hexanes to afford the desired product as a yellow translucent oil (1.13 g, 2.74 mmol, 71%).
1H NMR: (600 MHz, CDCl3) δ 7.75 (m, 2H), 7.31 (m, 2H), 4.52 (dd, J = 7.9, 2.6 Hz, 1H), 4.25 (d, J = 2.6 Hz, 1H), 4.16 (dd, J = 7.9, 1.1 Hz, 1H), 4.02 (d, J = 10.3 Hz, 1H), 3.98 (d, J = 10.3 Hz, 1H), 3.82 (dd, J = 13.0, 1.8 Hz, 1H), 3.66 (d, J = 13.0 Hz, 1H), 2.40 (s, 3H), 1.46 (s, 3H), 1.32 (s, 3H), 1.32 (s, 3H), 1.27 (s, 3H).
13C NMR: (151 MHz, CDCl3) δ 145.0, 132.5, 129.9, 128.1, 109.2, 109.0, 100.7, 70.6, 70.0, 69.9, 69.2, 61.3, 26.5, 25.7, 25.2, 24.0, 21.6.
LRMS (ESI): calc. for C19H27O8S [M + H]+: 415, found: 415.
Note:
1H and
13C NMR data in accordance with the literature [
53].
1-azido-1-deoxy-2,3:4,5-di-O-isopropylidene-β-D-fructopyranose (5): 2,3;4,5-di-O-isopropylidene-1-O-tosyl-β-D-fructopyranose (502.0 mg, 1.21 mmol, 1.0 eq) was added to a vial and dissolved in 6 mL DMF, after which sodium azide (395.1 mg, 6.08 mmol, 5.0 eq) was added. The mixture was then heated to 150 °C overnight. After two days, additional sodium azide (193.7 mg, 2.98 mmol, 2.5 eq) in 1 mL DMF was added. After four more days, the reaction was quenched with 50 mL brine and extracted with 3 × 100 mL portions of DCM. The organic layers were combined and rotovaped to afford a red oil. The crude material was then purified via automated flash column chromatography using a gradient of 0–30% EtOAc in hexanes to afford the desired compound as an off-white solid (166.2 mg, 0.583 mmol, 48%).
1H NMR: (600 MHz, CDCl3) δ 4.60 (dd, J = 7.9, 2.6 Hz, 1H), 4.28 (d, J = 2.7 Hz, 1H), 4.22 (dd, J = 7.9, 1.2 Hz, 1H), 3.91 (dd, J = 13.0, 1.9 Hz, 1H), 3.76 (dd, J = 13.0, 0.5 Hz, 1H), 3.58 (d, J = 13.0 Hz, 1H), 3.26 (d, J = 13.0 Hz, 1H), 1.55 (s, 3H), 1.48 (s, 3H), 1.46 (s, 3H), 1.33 (s, 3H).
13C NMR: (151 MHz, CDCl3) δ 109.3, 109.2, 102.8, 70.88, 70.87, 70.2, 61.2, 55.6, 26.7, 26.0, 24.9, 24.1.
LRMS (ESI): calc. for C12H20N3O5 [M + H]+: 286, found: 286.
Note:
1H NMR data in accordance with the literature [
66]. No
13C data reported in the literature.
2,3:4,5-di-O-isopropylidene-2-oxo-D-gluconic acid (7): To a 50 mL flask was added 2,3;4,5-di-O-isopropylidene-β-D-fructopyranose (499.6 mg, 1.919 mmol, 1.0 eq), TEMPO (59.6 mg, 0.381 mmol, 0.2 eq), and bis(acetoxy) iodobenzene (1.5488 g, 4.808 mmol, 2.5 eq), which were then suspended in 13.5 mL 4:4:1 DCM:tBuOH:H2O. The mixture was stirred vigorously for 4.75 h, after which it was quenched with 70 mL 10 wt.% Na2S2O3 in H2O and extracted with 2 × 75 mL portions of EtOAc. The organic layers were combined, dried over anh. Na2SO4, and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 89:10:1 to 29:70:1 Hex:EtOAc:AcOH to afford the desired product as a yellow-orange residue (420.2 mg, 1.532 mmol, 80%).
1H NMR: (600 MHz, CDCl3) δ 4.66–4.62 (m, 2H, os), 4.27 (d, J = 7.4 Hz, 1H), 3.99–3.89 (m, 2H, os), 1.57 (s, 3H), 1.53 (s, 3H), 1.46 (s, 3H), 1.35 (s, 3H).
13C NMR: (151 MHz, CDCl3) δ 168.2, 111.6, 109.6, 98.9, 73.1, 70.1, 69.8, 62.1, 26.3, 25.9, 24.5, 24.0.
Note:
1H NMR data in accordance with the literature [
67]. No
13C NMR data have been reported.
General Procedure for the Preparation of 4-(2-piperidin-1-yl)ethoxy)benzoyl chloride (24): To an oven-dried 50 mL round bottom flask was added 4-(2-piperidin-1-yl)ethoxy)benzoic acid hydrochloride (1.8269 g, 6.393 mmol, 1.0 eq), which was suspended in 2.5 mL thionyl chloride. Anhydrous DMF (3 drops, catalytic) was added, and the mixture was refluxed for 2 h. The solvent was then evaporated to afford the desired product as a pale yellow solid in quantitative yield, which was taken directly to the next step.
N-(2-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (11): To an oven-dried 100 mL round bottom flask was added 2-ethynyl aniline (0.28 mL, 2.462 mmol, 1.0 eq), which was dissolved in 15 mL DCM. Triethylamine (1.8 mL, 12.91 mmol, 5.2 eq) was added, followed by a solution of 4-(2-(piperidin-1-yl)ethoxy)benzoyl chloride (1.7149 g, 6.405 mmol, 2.6 eq) in 15 mL DCM. The solution was stirred at room temperature overnight. After 123 h, the reaction was quenched with 10 mL H2O and extracted with 180 mL DCM. The organic layer was separated and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 92:6:2 to 38:60:2 Hex:EtOAc:TEA and then recrystallized from MeOH to afford the desired product as an off-white crystalline solid (394.6 mg, 1.132 mmol, 46%).
1H NMR: (600 MHz, CDCl3) δ 8.71 (s, 1H), 8.59 (dd, J = 8.4, 1.1 Hz, 1H), 7.92–7.81 (m, 2H), 7.50 (dd, J = 7.7, 1.6 Hz, 1H), 7.45–7.38 (m, 1H), 7.07 (td, J = 7.6, 1.1 Hz, 1H), 7.03–6.96 (m, 2H), 4.17 (t, J = 6.0 Hz, 2H), 3.59 (s, 1H), 2.80 (t, J = 6.0 Hz, 2H), 2.62–2.41 (m, 4H), 1.62 (quint, J = 5.6 Hz, 4H), 1.50–1.39 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 164.8, 162.0, 140.0, 132.1, 130.4, 128.9, 127.0, 123.2, 119.2, 114.7, 110.8, 84.6, 79.6, 66.3, 57.8, 55.1, 26.0, 24.2.
HRMS (ESI): calc. for C22H25N2O2 [M + H]+: 349.1911, found: 349.1906.
N-(3-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (12): To an oven-dried 100 mL round bottom flask was added 3-ethynyl aniline (0.45 mL, 4.302 mmol, 1.0 eq), 15 mL DCM, and TEA (1.81 mL, 12.986 mmol, 3.0 eq). The solution was then subjected to portionwise addition of a solution of 4-(2-(piperidin-1-yl)ethoxy)benzoyl chloride (1.7117 g, 6.393 mmol, 1.5 eq) in 25 mL DCM. After addition, the solution was stirred at room temperature overnight. After 48.5 h, the reaction was quenched with 20 mL H2O and extracted with 200 mL DCM. The organic layer was separated and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 74:25:1 to 34:65:1 Hex:EtOAc:TEA to afford the desired product as a salmon-colored solid (1.3079 g, 3.753 mmol, 87%).
1H NMR: (600 MHz, CDCl3) δ 7.85–7.78 (m, 2H), 7.76–7.72 (m, 2H), 7.71–7.66 (m, 1H), 7.32 (t, J = 7.9 Hz, 1H), 7.27–7.25 (m, 1H), 7.00–6.94 (m, 2H), 4.17 (t, J = 6.0 Hz, 2H), 3.08 (s, 1H), 2.80 (t, J = 6.0 Hz, 2H), 2.61–2.40 (m, 4H), 1.62 (quint, J = 5.6 Hz, 4H), 1.51–1.42 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 165.2, 161.9, 138.1, 129.1, 128.9, 128.0, 126.8, 123.5, 122.9, 120.6, 114.6, 83.2, 77.5, 66.3, 57.8, 55.1, 25.9, 24.2.
HRMS (ESI): calc. for C22H25N2O2 [M + H]+: 349.1911, found: 349.1903.
N-(4-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (13): To an oven-dried 100 mL round bottom flask was added 4-ethynyl aniline (502.6 mg, 4.290 mmol, 1.0 eq), which was dissolved in 15 mL DCM. The solution was cooled to 0 °C and TEA (1.81 mL, 12.986 mmol, 3.0 eq) was added, followed by portionwise addition of a solution of 4-(2-(piperidin-1-yl)ethoxy)benzoyl chloride (1.7144 g, 6.403 mmol, 1.5 eq) in 20 mL DCM. The solution was stirred overnight and allowed to gradually warm to room temperature. After 48.5 h, the reaction was quenched with 30 mL AQ K2CO3 and extracted with 200 mL DCM. The organic layer was separated and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 75:24:1 to 29:70:1 Hex:EtOAc:TEA to afford the desired product as a light pink crystalline solid (1.3151 g, 3.774 mmol, 88%).
1H NMR: (600 MHz, CDCl3) δ 7.86–7.78 (m, 2H), 7.76 (s, 1H), 7.63–7.58 (m, 2H), 7.52–7.47 (m, 2H), 7.01–6.95 (m, 2H), 4.17 (t, J = 6.0 Hz, 2H), 3.06 (s, 1H), 2.80 (t, J = 6.0 Hz, 2H), 2.63–2.43 (m, 4H), 1.62 (quint, J = 5.6 Hz, 4H), 1.51–1.43 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 165.2, 162.1, 138.8, 133.2, 129.0, 126.9, 119.7, 117.8, 114.8, 83.6, 66.4, 57.9, 55.3, 26.1, 24.3.
13C NMR: (151 MHz, DMSO-d6) δ 165.0, 161.3, 140.0, 132.2, 129.7, 126.6, 120.0, 116.2, 114.2, 83.6, 79.9, 65.9, 57.3, 54.4, 25.6, 23.9.
HRMS (ESI): calc. for C22H25N2O2 [M + H]+: 349.1911, found: 349.1902.
(2R,3R,4S,5R)-2-(4-(2-(4-(2-(piperidin-1-yl)ethoxy)benzamido)phenyl)-1H-1,2,3-triazol-1-yl)tetrahydro-2H-pyran-3,4,5-triyl triacetate (LS-TX-2P): To a vial was added N-(2-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (133.3 mg, 0.383 mmol, 1.0 eq) and 2,3,4-tri-O-acetyl-β-D-xylopyranosyl azide (115.8 mg, 0.384 mmol, 1.0 eq), which were then dissolved in 6 mL DMF, 1.2 mL THF, and 0.6 mL H2O. To the solution was then added CuSO4 (122.3 mg, 0.766 mmol, 2.0 eq) and sodium ascorbate (462.2 mg, 2.333 mmol, 6.1 eq). The mixture was stirred at room temperature overnight. After 25 h, the reaction was stopped and the solvent was evaporated. The crude material was purified via automated flash column chromatography using a gradient of 90:8:2 to 0:98:2 Hex:EtOAc:TEA to afford the desired product as a pale yellow solid (165.7 mg, 0.255 mmol, 67%).
1H NMR: (600 MHz, CDCl3) δ 11.81 (s, 1H), 8.83 (dd, J = 8.4, 1.1 Hz, 1H), 8.13–8.04 (m, 3H), 7.52 (dd, J = 7.8, 1.5 Hz, 1H), 7.45–7.38 (m, 1H), 7.14 (td, J = 7.5, 1.2 Hz, 1H), 7.05–6.97 (m, 2H), 5.85 (d, J = 8.6 Hz, 1H), 5.49 (d, J = 9.3 Hz, 1H), 5.46 (t, J = 9.1 Hz, 1H), 5.20 (ddd, J = 10.0, 8.8, 5.6 Hz, 1H), 4.36 (dd, J = 11.7, 5.7 Hz, 1H), 4.18 (t, J = 6.0 Hz, 2H), 3.65 (dd, J = 11.7, 10.3 Hz, 1H), 2.81 (t, J = 6.0 Hz, 2H), 2.64–2.41 (m, 4H), 2.10 (s, 3H), 2.07 (s, 3H), 1.89 (s, 3H), 1.62 (quint, J = 5.7 Hz, 4H), 1.50–1.40 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 169.9, 169.7, 169.0, 165.4, 161.7, 148.5, 137.1, 129.7, 129.4, 127.5, 127.4, 123.4, 121.7, 119.1, 117.1, 114.5, 86.7, 71.9, 70.4, 68.3, 66.2, 65.7, 57.8, 55.1, 26.0, 24.2, 20.6, 20.6, 20.2.
HRMS (ESI): calc. for C33H40N5O9 [M + H]+: 650.2821, found: 650.2816.
(2R,3R,4S,5R)-2-(4-(3-(4-(2-(piperidin-1-yl)ethoxy)benzamido)phenyl)-1H-1,2,3-triazol-1-yl)tetrahydro-2H-pyran-3,4,5-triyl triacetate (LS-TX-3P): To a vial was added N-(3-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (134.6 mg, 0.386 mmol, 1.0 eq) and 2,3,4-tri-O-acetyl-β-D-xylopyranosyl azide (116.4 mg, 0.386 mmol, 1.0 eq), which were then dissolved in 6 mL DMF, 1.2 mL THF, and 0.6 mL H2O. The solution was stirred and CuSO4 (121.8 mg, 0.763 mmol, 2.0 eq) and sodium ascorbate (303.0 mg, 1.529 mmol, 4.0 eq) were added. The mixture was stirred vigorously at room temperature overnight. After 13.5 h, the reaction was complete and the solvent was evaporated. The crude material was twice purified via automated flash column chromatography, first with a 27:72:1 to 0:99:1 Hex:EtOAc:TEA gradient, and then with a 100:0 to 90:10 DCM:MeOH gradient to afford the desired product as a yellow solid (161.2 mg, 0.248 mmol, 64%).
1H NMR: (600 MHz, CDCl3) δ 8.08 (t, J = 1.9 Hz, 1H), 8.04 (s, 1H), 8.02 (s, 1H), 7.89–7.84 (m, 2H), 7.80 (m, 1H), 7.60 (dt, J = 7.7, 1.4 Hz, 1H), 7.43 (t, J = 7.9 Hz, 1H), 7.00–6.95 (m, 2H), 5.83 (m, 1H), 5.49–5.39 (m, 2H, os), 5.18 (m, 1H), 4.42–4.22 (m, 3H, os), 3.63 (dd, J = 11.7, 10.4 Hz, 1H), 3.07–2.95 (m, 2H), 2.94–2.56 (m, 4H), 2.09 (s, 3H), 2.07 (s, 3H), 1.90 (s, 3H), 1.82–1.74 (m, 4H), 1.57–1.49 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 169.9, 169.8, 169.0, 165.2, 161.2, 148.0, 138.8, 130.7, 129.7, 129.0, 127.4, 121.7, 120.2, 118.2, 117.3, 114.6, 86.4, 72.1, 70.4, 68.5, 65.6, 65.2, 57.2, 54.8, 24.8, 23.4, 20.7, 20.6, 20.2.
HRMS (ESI): calc. for C33H40N5O9 [M + H]+: 650.2821, found: 650.2807.
(2R,3R,4S,5R)-2-(4-(4-(4-(2-(piperidin-1-yl)ethoxy)benzamido)phenyl)-1H-1,2,3-triazol-1-yl)tetrahydro-2H-pyran-3,4,5-triyl triacetate (LS-TX-4P): To a vial was added N-(4-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (133.0 mg, 0.382 mmol, 1.0 eq) and 2,3,4-tri-O-acetyl-β-D-xylopyranosyl azide (116.4 mg, 0.386 mmol, 1.0 eq), which were then dissolved in 6 mL DMF, 1.2 mL THF, and 0.6 mL H2O. To the solution was added CuSO4 (121.3 mg, 0.760 mmol, 2.0 eq) and sodium ascorbate (302.8 mg, 1.528 mmol, 4.0 eq). The mixture was stirred vigorously at room temperature overnight. After 13.5 h, the reaction was complete and the solvent was evaporated. The crude material was twice purified via automated flash column chromatography, first using a gradient of 24:75:1 to 0:99:1 Hex:EtOAc:TEA, then using a gradient of 100:0 to 90:10 DCM:MeOH to afford the desired product as a dark yellow solid (94.0 mg, 0.145 mmol, 38%).
1H NMR: (600 MHz, CDCl3) δ 7.97 (s, 1H), 7.95 (s, 1H), 7.88–7.84 (m, 2H), 7.85–7.81 (m, 2H), 7.77–7.72 (m, 2H), 7.00–6.95 (m, 2H), 5.84 (d, J = 8.6 Hz, 1H), 5.47 (t, J = 9.2 Hz, 1H), 5.44 (t, J = 9.6 Hz, 1H), 5.22–5.15 (m, 1H), 4.39–4.25 (m, 3H, os), 3.62 (dd, J = 11.6, 10.4 Hz, 1H), 3.06–2.93 (m, 2H), 2.88–2.61 (m, 4H), 2.09 (s, 3H), 2.06 (s, 3H), 1.90 (s, 3H), 1.81–1.74 (m, 4H), 1.56–1.49 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 169.9, 169.8, 169.1, 165.1, 161.0, 148.0, 138.5, 129.1, 127.6, 126.6, 126.0, 120.4, 117.4, 114.6, 86.4, 72.2, 70.4, 68.5, 65.6, 64.8, 57.1, 54.7, 24.5, 23.2, 20.7, 20.6, 20.3.
HRMS (ESI): calc. for C33H40N5O9 [M + H]+: 650.2821, found: 650.2809.
4-(2-(piperidin-1-yl)ethoxy)-N-(2-(1-(((3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis([1,3]dioxolo)[4,5-b:4′,5′-d]pyran-3a-yl)methyl)-1H-1,2,3-triazol-4-yl)phenyl)benzamide (LS-TF-2P): To a vial was added N-(2-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (134.5 mg, 0.386 mmol, 1.0 eq) and 1-azido-1-deoxy-2,3;4,5-di-O-isopropylidene-β-D-fructose (108.3 mg, 0.380 mmol, 1.0 eq), which were then dissolved in 6 mL DMF, 1.2 mL THF, and 0.6 mL H2O. To the solution was then added CuSO4 (121.1 mg, 0.759 mmol, 2.0 eq) and sodium ascorbate (302.0 mg, 1.524 mmol, 4.0 eq). The mixture was stirred vigorously at room temperature overnight. Upon completion of the reaction, the solvent was evaporated. The crude material was twice purified via automated flash column chromatography, first using a gradient of 100:0 to 85:15 DCM:MeOH, then 90:9:1 to 40:59:1 Hex:EtOAc:TEA to afford the desired product as a yellow flaky solid (158.3 mg, 0.250 mmol, 66%).
1H NMR: (600 MHz, CDCl3) δ 12.01 (s, 1H), 8.84 (d, J = 8.5 Hz, 1H), 8.15–8.07 (m, 2H), 8.03 (s, 1H), 7.53 (dd, J = 7.8, 1.5 Hz, 1H), 7.42–7.36 (m, 1H), 7.15–7.10 (m, 1H), 7.05–6.99 (m, 2H), 4.83 (d, J = 14.4 Hz, 1H), 4.68 (dd, J = 7.8, 2.7 Hz, 1H), 4.64 (d, J = 14.4 Hz, 1H), 4.52 (d, J = 2.8 Hz, 1H), 4.27 (dd, J = 7.9, 1.7 Hz, 1H), 4.19 (t, J = 6.0 Hz, 2H), 3.95 (dd, J = 13.0, 1.9 Hz, 1H), 3.83 (d, J = 12.9 Hz, 1H), 2.82 (t, J = 6.0 Hz, 2H), 2.63–2.45 (m, 4H), 1.63 (quint, J = 5.7 Hz, 4H), 1.51 (s, 3H), 1.49 (s, 3H), 1.48–1.42 (m, 2H), 1.38 (s, 3H), 0.84 (s, 3H).
13C NMR: (151 MHz, CDCl3) δ 165.5, 161.6, 147.7, 137.0, 129.4, 129.2, 127.5, 127.1, 123.7, 123.2, 121.6, 117.6, 114.5, 109.7, 109.4, 100.7, 70.8, 70.5, 70.1, 66.1, 61.9, 57.8, 55.4, 55.1, 26.4, 26.0, 25.9, 24.4, 24.2, 24.0.
HRMS (ESI): calc. for C34H44N5O7 [M + H]+: 634.3241, found: 634.3259.
4-(2-(piperidin-1-yl)ethoxy)-N-(3-(1-(((3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis([1,3]dioxolo)[4,5-b:4′,5′-d]pyran-3a-yl)methyl)-1H-1,2,3-triazol-4-yl)phenyl)benzamide (LS-TF-3P): To a vial was added N-(3-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (132.0 mg, 0.379 mmol, 1.0 eq) and 1-azido-1-deoxy-2,3;4,5-di-O-isopropylidene-β-D-fructose (108.9 mg, 0.382 mmol, 1.0 eq), which were then dissolved in 6 mL DMF, 1.2 mL THF, and 0.6 mL H2O. To the solution was then added CuSO4 (122.7 mg, 0.769 mmol, 2.0 eq) and sodium ascorbate (303.2 mg, 1.530 mmol, 4.0 eq). The mixture was stirred vigorously at room temperature overnight. After 22 h, the reaction was stopped and the solvent was evaporated. The crude material was twice purified via automated flash column chromatography, first using a gradient of 74:25:1 to 0:99:1 Hex:EtOAc:TEA, then 100:0 to 90:10 DCM:MeOH to afford the desired product as a yellow-orange foam (122.7 mg, 0.194 mmol, 51%).
1H NMR: (600 MHz, CDCl3) δ 8.11 (s, 1H), 8.09 (t, J = 1.9 Hz, 1H), 7.96 (s, 1H), 7.91–7.85 (m, 2H), 7.80–7.73 (m, 1H), 7.61 (dt, J = 7.7, 1.3 Hz, 1H), 7.42 (t, J = 7.9 Hz, 1H), 7.00–6.91 (m, 2H), 4.78 (d, J = 14.4 Hz, 1H), 4.65 (dd, J = 7.8, 2.7 Hz, 1H), 4.58 (d, J = 14.5 Hz, 1H), 4.52 (d, J = 2.7 Hz, 1H), 4.42–4.31 (m, 2H), 4.25 (dd, J = 7.8, 1.7 Hz, 1H), 3.93 (dd, J = 12.9, 1.9 Hz, 1H), 3.81 (d, J = 12.8 Hz, 1H), 3.13–3.00 (m, 2H), 2.98–2.66 (m, 4H), 1.88–1.75 (m, 4H), 1.58–1.52 (m, 2H), 1.50 (s, 3H), 1.48 (s, 3H), 1.36 (s, 3H), 0.84 (s, 3H).
13C NMR: (151 MHz, CDCl3) δ 165.2, 160.9, 147.2, 138.8, 131.4, 129.6, 129.1, 127.6, 122.8, 121.6, 119.9, 117.2, 114.6, 109.6, 109.3, 100.9, 70.8, 70.6, 70.1, 64.7, 61.9, 57.0, 55.2, 54.7, 26.4, 26.1, 24.3, 24.0, 23.1.
HRMS (ESI): calc. for C34H44N5O7 [M + H]+: 634.3241, found: 634.3231.
4-(2-(piperidin-1-yl)ethoxy)-N-(4-(1-(((3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis([1,3]dioxolo)[4,5-b:4′,5′-d]pyran-3a-yl)methyl)-1H-1,2,3-triazol-4-yl)phenyl)benzamide (LS-TF-4P): To a vial was added N-(4-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (133.2 mg, 0.382 mmol, 1.0 eq) and 1-azido-1-deoxy-2,3;4,5-di-O-isopropylidene-β-D-fructose (110.1 mg, 0.386 mmol, 1.0 eq), which were then dissolved in 6 mL DMF, 1.2 mL THF, and 0.6 mL H2O. To the solution was then added CuSO4 (123.2 mg, 0.772 mmol, 2.0 eq) and sodium ascorbate (304.1 mg, 1.535 mmol, 4.0 eq). The mixture was stirred vigorously at room temperature overnight. Upon completion, the reaction was stopped and the solvent was evaporated. The crude material was twice purified via automated flash column chromatography, first using a gradient of 69:30:0:1 to 0:99:0:1 to 0:89:10:1 Hex:EtOAc:MeOH:TEA, then 100:0 to 90:10 DCM:MeOH to afford the desired product as a yellow-orange solid (141.1 mg, 0.223 mmol, 58%).
1H NMR: (600 MHz, CDCl3) δ 7.93 (s, 1H), 7.89 (s, 1H), 7.88–7.80 (m, 4H), 7.75–7.68 (m, 2H), 6.99–6.92 (m, 2H), 4.79 (d, J = 14.4 Hz, 1H), 4.65 (dd, J = 7.8, 2.7 Hz, 1H), 4.58 (d, J = 14.5 Hz, 1H), 4.53 (d, J = 2.7 Hz, 1H), 4.29–4.20 (m, 3H, os), 3.94 (dd, J = 12.9, 1.9 Hz, 1H), 3.81 (d, J = 12.9 Hz, 1H), 2.90 (t, J = 5.7 Hz, 2H), 2.72–2.56 (m, 4H), 1.75–1.63 (m, 4H), 1.53–1.45 (m, 2H), 1.49 (s, 3H), 1.49 (s, 3H), 1.36 (s, 3H), 0.85 (s, 3H).
13C NMR: (151 MHz, CDCl3) δ 165.5, 161.4, 147.2, 138.4, 129.2, 127.2, 126.4, 126.3, 122.3, 120.6, 114.4, 109.5, 109.3, 100.9, 70.8, 70.5, 70.1, 65.5, 61.9, 57.4, 55.2, 54.9, 26.4, 26.0, 25.3, 24.3, 24.0, 23.7.
HRMS (ESI): calc. for C34H44N5O7 [M + H]+: 634.3241, found: 634.3231.
(2R,3R,4S,5R,6R)-2-(acetoxymethyl)-6-(4-(2-(4-(2-(piperidin-1-yl)ethoxy)benzamido)phenyl)-1H-1,2,3-triazol-1-yl)tetrahydro-2H-pyran-3,4,5-triyl triacetate (LS-TG-2P): To a vial was added N-(2-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (117.5 mg, 0.337 mmol, 1.0 eq) and 1-azido-1-deoxy-β-D-glucose tetraacetate (126.4 mg, 0.339 mmol, 1.0 eq), which were then dissolved in 6 mL DMF, 1.2 mL THF, and 0.6 mL H2O. To the solution was then added CuSO4 (107.9 mg, 0.676 mmol, 2.0 eq) and sodium ascorbate (267.3 mg, 1.349 mmol, 4.0 eq). The mixture was stirred vigorously at room temperature overnight. Upon completion of the reaction, the solvent was evaporated. The crude material was purified via automated flash column chromatography, using a gradient of 69:30:1 to 0:99:1 Hex:EtOAc:TEA to afford the desired product as a yellow flaky solid (149.5 mg, 0.207 mmol, 61%).
1H NMR: (600 MHz, CDCl3) δ 11.80 (s, 1H), 8.83 (dd, J = 8.4, 1.2 Hz, 1H), 8.12 (s, 1H), 8.11–8.07 (m, 2H), N7.54 (dd, J = 7.8, 1.5 Hz, 1H), 7.42 (ddd, J = 8.5, 7.3, 1.6 Hz, 1H), 7.15 (td, J = 7.5, 1.2 Hz, 1H), 7.04–6.99 (m, 2H), 5.94 (d, J = 9.4 Hz, 1H), 5.55 (t, J = 9.5 Hz, 1H), 5.47 (t, J = 9.5 Hz, 1H), 5.29 (t, J = 9.6 Hz, 1H), 4.34 (dd, J = 12.7, 5.1 Hz, 1H), 4.21–4.14 (m, 3H, os), 4.06 (ddd, J = 10.2, 5.1, 2.2 Hz, 1H), 2.81 (t, J = 6.0 Hz, 2H), 2.61–2.44 (m, 4H), 2.09 (s, 3H), 2.09 (s, 3H), 2.05 (s, 3H), 1.88 (s, 3H), 1.62 (quint, J = 5.7 Hz, 4H), 1.50–1.42 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 170.5, 169.9, 169.3, 168.9, 165.4, 161.7, 148.5, 137.0, 129.7, 129.4, 127.5, 127.4, 123.4, 121.7, 119.3, 117.1, 114.5, 86.1, 75.4, 72.6, 70.3, 67.7, 66.2, 61.5, 57.8, 55.1, 25.9, 24.2, 20.7, 20.5, 20.5, 20.2.
HRMS (ESI): calc. for C36H44N5O11 [M + H]+: 722.3032, found: 722.3018.
(2R,3R,4S,5R,6R)-2-(acetoxymethyl)-6-(4-(3-(4-(2-(piperidin-1-yl)ethoxy)benzamido)phenyl)-1H-1,2,3-triazol-1-yl)tetrahydro-2H-pyran-3,4,5-triyl triacetate (LS-TG-3P): To a vial was added N-(3-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (118.3 mg, 0.340 mmol, 1.0 eq) and 1-azido-1-deoxy-β-D-glucose tetraacetate (126.4 mg, 0.339 mmol, 1.0 eq), which were then dissolved in 6 mL DMF, 1.2 mL THF, and 0.6 mL H2O. The solution was stirred and CuSO4 (110.0 mg, 0.689 mmol, 2.0 eq) and sodium ascorbate (269.8 mg, 1.362 mmol, 4.0 eq) were added. The mixture was stirred vigorously at room temperature overnight. Upon completion of the reaction, the solvent was evaporated. The crude material was twice purified via automated flash column chromatography, first with a 24:75:1 to 0:99:1 Hex:EtOAc:TEA gradient, and then with a 100:0 to 90:10 DCM:MeOH gradient to afford the desired product as a light orange solid (113.5 mg, 0.157 mmol, 46%).
1H NMR: (600 MHz, CDCl3) δ 8.10 (t, J = 1.9 Hz, 1H), 8.07 (s, 1H), 7.94 (s, 1H), 7.89–7.84 (m, 2H), 7.78–7.73 (m, 1H), 7.62 (dt, J = 8.0, 1.5 Hz, 1H), 7.44 (t, J = 7.9 Hz, 1H), 7.02–6.96 (m, 2H), 5.92 (d, J = 9.2 Hz, 1H), 5.51 (t, J = 9.4 Hz, 1H), 5.45 (t, J = 9.4 Hz, 1H), 5.27 (dd, J = 10.1, 9.2 Hz, 1H), 4.38–4.28 (m, 3H, os), 4.17 (dd, J = 12.6, 2.1 Hz, 1H), 4.03 (ddd, J = 10.1, 5.0, 2.1 Hz, 1H), 3.09–2.90 (m, 2H), 2.91–2.56 (m, 4H), 2.10 (s, 3H), 2.08 (s, 3H), 2.04 (s, 3H), 1.89 (s, 3H), 1.81–1.73 (m, 4H), 1.56–1.51 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 170.6, 170.0, 169.4, 169.0, 165.2, 161.3, 148.1, 138.8, 130.7, 129.7, 129.0, 127.4, 121.7, 120.2, 118.3, 117.4, 114.6, 85.9, 75.2, 72.7, 70.3, 67.7, 65.2, 61.6, 57.3, 54.8, 24.9, 23.4, 20.7, 20.6, 20.6, 20.2.
HRMS (ESI): calc. for C36H44N5O11 [M + H]+: 722.3032, found: 722.3020.
(2R,3R,4S,5R,6R)-2-(acetoxymethyl)-6-(4-(4-(4-(2-(piperidin-1-yl)ethoxy)benzamido)phenyl)-1H-1,2,3-triazol-1-yl)tetrahydro-2H-pyran-3,4,5-triyl triacetate (LS-TG-4P): To a vial was added N-(4-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (117.4 mg, 0.337 mmol, 1.0 eq) and 1-azido-1-deoxy-β-D-glucose tetraacetate (125.3 mg, 0.336 mmol, 1.0 eq), which were then dissolved in 6 mL DMF, 1.2 mL THF, and 0.6 mL H2O. The solution was stirred and CuSO4 (108.2 mg, 0.678 mmol, 2.0 eq) and sodium ascorbate (266.4 mg, 1.345 mmol, 4.0 eq) were added. The mixture was stirred vigorously at room temperature overnight. Upon completion of the reaction, the solvent was evaporated. The crude material was twice purified via automated flash column chromatography with a gradient of 24:75:0:1 to 0:99:0:1 to 0:94:5:1 Hex:EtOAc:MeOH:TEA gradient to afford the desired product as an off-white solid (140.9 mg, 0.195 mmol, 58%).
1H NMR: (600 MHz, CDCl3) δ 7.99 (s, 1H), 7.87–7.83 (m, 4H), 7.82 (s, 1H), 7.75–7.71 (m, 2H), 7.02–6.97 (m, 2H), 5.93 (d, J = 9.4 Hz, 1H), 5.53 (t, J = 9.5 Hz, 1H), 5.45 (t, J = 9.4 Hz, 1H), 5.28 (dd, J = 10.2, 9.3 Hz, 1H), 4.33 (dd, J = 12.7, 5.1 Hz, 1H), 4.30–4.20 (m, 2H), 4.17 (dd, J = 12.7, 2.2 Hz, 1H), 4.03 (ddd, J = 10.2, 5.1, 2.2 Hz, 1H), 2.96–2.84 (m, 2H), 2.80–2.46 (m, 4H), 2.10 (s, 3H), 2.08 (s, 3H), 2.05 (s, 3H), 1.90 (s, 3H), 1.74–1.66 (m, 4H), 1.52–1.48 (m, 2H).
13C NMR: (151 MHz, CDCl
3) δ 170.5, 169.9, 169.4, 169.0, 165.1, 161.6, 148.1, 138.4, 128.9, 127.2, 126.7, 125.9, 120.3, 117.4, 114.6, 85.8, 75.2, 72.8, 70.2, 67.7, 61.6, 57.5, 55.0, 25.4, 23.8, 20.7, 20.6, 20.5, 20.2. Note:
13C signal missing for CH
2 vicinal to phenolic oxygen, but clear correlation to a carbon at 65.8 ppm can be seen via HSQC (see
Supplementary Materials).
HRMS (ESI): calc. for C36H44N5O11 [M + H]+: 722.3032, found: 722.3020.
N-(2-(1H-1,2,3-triazol-4-yl)phenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (LS-T-2): To a vial was added formaldehyde (37 wt.% in H2O, 0.19 mL, 2.55 mmol, 11.0 eq), acetic acid (0.03 mL, 0.524 mmol, 2.3 eq), and 1.5 mL THF. The solution was stirred for 15 min. To the solution was added sodium azide (26.2 mg, 0.403 mmol, 1.7 eq) and a solution of N-(2-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (80.8 mg, 0.231 mmol, 1.0 eq) in 1.5 mL THF. The mixture was stirred for 10 min. To the mixture was added a solution of CuSO4 (5.0 mg, 31.3 μmol, 0.14 eq) in 0.5 mL H2O, followed by sodium ascorbate (26.0 mg, 0.131 mmol, 0.57 eq). The mixture was stirred at room temperature overnight. After 12 h, the solvent was removed via rotovap. The residue was then dissolved in 3 mL MeOH and 2N NaOH (1.0 mL, 2.0 mmol, 8.7 eq) and stirred at room temperature for 6 h. Upon completion, the mixture was filtered and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 100:0 to 90:10 DCM:MeOH, followed by recrystallization from MeOH/Acetone to afford the desired product as white crystals (12.8 mg, 32.7 μmol, 14%).
1H NMR: (600 MHz, DMSO-d6) δ 11.71 (s, 1H), 8.60–8.44 (m, 2H), 8.05–7.98 (m, 2H), 7.89 (dd, J = 7.8, 1.5 Hz, 1H), 7.40 (m, 1H), 7.23 (td, J = 7.6, 1.3 Hz, 1H), 7.16–7.08 (m, 2H), 4.18 (t, J = 5.9 Hz, 2H), 2.71 (t, J = 5.9 Hz, 2H), 2.48–2.37 (m, 4H), 1.51 (quint, J = 5.6 Hz, 4H), 1.42–1.35 (m, 2H).
13C NMR: (151 MHz, DMSO-d6) δ 164.3, 161.2, 145.0, 135.8, 129.0, 128.4, 127.8, 126.7, 126.2, 123.8, 121.7, 119.4, 114.5, 65.6, 57.0, 54.2, 25.3, 23.6.
HRMS (ESI): calc. for C22H26N5O2 [M + H]+: 392.2087, found: 392.2076.
1-(2-(4-((3-(1H-1,2,3-triazol-4-yl)phenyl)carbamoyl)phenoxy)ethyl)piperidin-1-ium acetate (LS-T-3): To a vial was added formaldehyde (37 wt.% in H2O, 0.19 mL, 2.55 mmol, 9.9 eq), acetic acid (0.03 mL, 0.524 mmol, 2.0 eq), and 1.5 mL THF. The solution was stirred for 15 min. To the solution was added sodium azide (27.2 mg, 0.418 mmol, 1.6 eq) and a solution of N-(3-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (89.4 mg, 0.257 mmol, 1.0 eq) in 1.5 mL THF. The mixture was stirred for 10 min. To the mixture was added a solution of CuSO4 (9.1 mg, 57.0 µmol, 0.22 eq) in 0.1 mL H2O, followed by sodium ascorbate (31.0 mg, 0.156 mmol, 0.61 eq). The mixture was stirred at room temperature overnight. Starting material was still not consumed, so to a separate vial was added formaldehyde (37 wt.% in H2O, 0.19 mL, 2.55 mmol, 9.9 eq), acetic acid (0.03 mL, 0.524 mmol, 2.0 eq), and 1.5 mL THF, which was stirred for 15 min, followed by addition of sodium azide (26.8 mg, 0.412 mmol, 1.6 eq) and stirring for 10 min. The new mixture was added to the initial reaction flask, followed by a solution of CuSO4 (8.4 mg, 52.6 µmol, 0.20 eq) in 0.1 mL H2O, followed by sodium ascorbate (31.0 mg, 0.156 mmol, 0.61 eq). The mixture was stirred at room temperature overnight. After a total of 46 h, the reaction was stopped, filtered, and evaporated. The crude material was then dissolved in 2 mL MeOH, and 2N NaOH (1.0 mL, 2.0 mmol, 7.8 eq) was added. The mixture was stirred at room temperature for 6 h, after which the solvent was evaporated. The crude material was purified via preparative HPLC using an H2O:MeCN:AcOH solvent system to afford the acetate salt of the desired product as a yellow solid (18.7 mg, 41.4 µmol, 16%).
1H NMR: (600 MHz, DMSO-d6) δ 10.19 (s, 1H), 8.33–8.29 (m, 1H), 8.27 (s, 1H), 8.01–7.96 (m, 2H), 7.80–7.75 (m, 1H), 7.58–7.54 (m, 1H), 7.41 (t, J = 7.9 Hz, 1H), 7.10–7.04 (m, 2H), 4.15 (t, J = 5.9 Hz, 2H), 2.68 (t, J = 5.9 Hz, 2H), 2.48–2.37 (m, 4H), 1.87 (s, 3H), 1.50 (quint, J = 5.6 Hz, 4H), 1.43–1.34 (m, 2H).
13C NMR: (151 MHz, DMSO-d6) δ 172.3, 164.8, 161.1, 145.2, 139.8, 130.7, 129.5, 129.0, 127.0, 126.6, 120.7, 119.9, 117.3, 114.0, 65.8, 57.2, 54.3, 25.5, 23.8, 21.5.
HRMS (ESI): calc. for C22H26N5O2 [M + H]+: 392.2087, found: 392.2082.
1-(2-(4-((4-(1H-1,2,3-triazol-4-yl)phenyl)carbamoyl)phenoxy)ethyl)piperidin-1-ium acetate (LS-T-4): To a vial was added formaldehyde (37 wt.% in H2O, 0.19 mL, 2.55 mmol, 11.0 eq), acetic acid (0.03 mL, 0.524 mmol, 2.3 eq), and 1.5 mL THF. The solution was stirred for 15 min. To the solution was added sodium azide (27.2 mg, 0.418 mmol, 1.6 eq) and a solution of N-(4-ethynylphenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (90.6 mg, 0.260 mmol, 1.0 eq) in 1.5 mL THF. The mixture was stirred for 10 min. To the mixture was added a solution of CuSO4 (7.1 mg, 44.5 µmol, 0.17 eq) in 0.5 mL H2O, followed by sodium ascorbate (31.2 mg, 0.157 mmol, 0.60 eq). The mixture was stirred at room temperature overnight, after which the solvent was removed via rotovap. The residue was then dissolved in 2 mL MeOH and 2N NaOH (1.0 mL, 2.0 mmol, 7.7 eq) and stirred at room temperature for 7 h, after which the solvent was evaporated. The crude material was purified via preparative HPLC using an H2O:MeCN:AcOH solvent system to afford the acetate salt of the desired product as a white solid (8.8 mg, 18.3 µmol, 7%).
1H NMR: (600 MHz, DMSO-d6) δ 10.18 (s, 1H), 8.26 (s, 1H), 7.98–7.93 (m, 2H), 7.89–7.85 (m, 2H), 7.85–7.80 (m, 2H), 7.11–7.04 (m, 2H), 4.15 (t, J = 5.9 Hz, 2H), 2.68 (t, J = 5.9 Hz, 2H), 2.48–2.38 (m, 4H), 1.87 (s, 3H), 1.50 (quint, J = 5.6 Hz, 4H), 1.43–1.34 (m, 2H).
13C NMR: (151 MHz, DMSO-d6) δ 172.2, 164.8, 161.1, 144.8, 139.1, 129.5, 126.6, 125.7, 125.2, 120.4, 114.0, 65.8, 57.2, 54.3, 25.5, 23.8, 21.5. Note: One 13C signal is missing and is not observable through any 2D correlations.
HRMS (ESI): calc. for C22H26N5O2 [M + H]+: 392.2087, found: 392.2098.
1-(2-(4-((2-(1-((2R,3R,4S,5R)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl)-1H-1,2,3-triazol-4-yl)phenyl)carbamoyl) phenoxy)ethyl)piperidin-1-ium acetate (LS-TX-2): To a vial was added LS-TX-2P (65.3 mg, 0.101 mmol, 1.0 eq), which was dissolved in 4 mL MeOH and 10 mL DMF. To the solution was added 0.5 M NaOMe (0.18 mL, 0.09 mmol, 0.9 eq). The solution was stirred at room temperature for 33 min, after which it was quenched with DOWEX 1x2-200 ion-exchange resin. The mixture was filtered and concentrated. The crude material was purified via preparative HPLC using an H2O:MeCN:AcOH solvent system to afford the acetate salt of the desired product as a white solid (15.4 mg, 26.4 µmol, 26%).
1H NMR: (600 MHz, DMSO-d6) δ 11.96 (s, 1H), 9.03 (s, 1H), 8.61 (d, J = 8.1 Hz, 1H), 8.05–7.97 (m, 2H), 7.85 (dd, J = 7.9, 1.5 Hz, 1H), 7.44–7.35 (m, 1H), 7.25–7.18 (m, 1H), 7.16–7.10 (m, 2H), 5.60 (d, J = 9.2 Hz, 1H), 4.18 (t, J = 5.9 Hz, 2H), 3.89 (dd, J = 11.0, 5.2 Hz, 1H), 3.82 (t, J = 9.0 Hz, 1H), 3.54–3.49 (m, 1H), 3.44 (t, J = 11.0 Hz, 1H), 3.39 (t, J = 9.0 Hz, 1H), 2.68 (t, J = 5.9 Hz, 2H), 2.48–2.40 (m, 4H), 1.84 (s, 3H), 1.50 (quint, J = 5.6 Hz, 4H), 1.42–1.34 (m, 2H). Note: hydroxyl O-H not observed.
13C NMR: (151 MHz, DMSO-
d6) δ 173.5, 164.4, 161.5, 146.3, 136.1, 129.1, 128.7, 127.7, 126.7, 123.8, 122.1, 121.2, 118.3, 114.7, 88.7, 76.8, 72.3, 69.1, 68.5, 66.0, 57.3, 54.4, 25.6, 23.9, 22.0. Note: Note: Acetate carbonyl carbon signal at 173.5 ppm is not observable in the
13C spectrum and was assigned using the HMBC correlation from the adjacent CH
3 (See
Supplementary Materials).
HRMS (ESI): calc. for C27H34N5O6 [M + H]+: 524.2509, found: 524.2502.
1-(2-(4-((3-(1-((2R,3R,4S,5R)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl)-1H-1,2,3-triazol-4-yl)phenyl)carbamoyl) phenoxy)ethyl)piperidin-1-ium acetate (LS-TX-3): To a vial was added LS-TX-3P (64.4 mg, 99.1 µmol, 1.0 eq), which was dissolved in 4 mL MeOH and 0.5 mL DMF. To the solution was added 0.5 M NaOMe (0.18 mL, 0.09 mmol, 0.9 eq). The solution was stirred at room temperature for 37 min, after which it was quenched with DOWEX 1x2-200 ion-exchange resin. The mixture was filtered and concentrated. The crude material was purified via preparative HPLC using an H2O:MeCN:AcOH solvent system to afford the acetate salt of the desired product as a yellow solid (37.6 mg, 64.4 µmol, 65%).
1H NMR: (600 MHz, DMSO-d6) δ 10.20 (s, 1H), 8.78 (s, 1H), 8.39–8.35 (m, 1H), 8.02–7.96 (m, 2H), 7.78–7.74 (m, 1H), 7.56–7.53 (m, 1H), 7.41 (t, J = 7.9 Hz, 1H), 7.11–7.05 (m, 2H), 5.53 (d, J = 9.2 Hz, 1H), 5.47 (s, 1H), 5.36 (s, 1H), 5.21 (s, 1H), 4.20 (t, J = 5.8 Hz, 2H), 3.87 (dd, J = 11.0, 5.3 Hz, 1H), 3.83 (t, J = 9.1 Hz, 1H), 3.53–3.49 (m, 1H), 3.40 (t, J = 10.9 Hz, 1H), 3.37 (t, J = 9.1 Hz, 1H), 2.86–2.72 (m, 2H), 2.63–2.51 (m, 4H), 1.91 (s, 3H), 1.58–1.50 (m, 4H), 1.44–1.36 (m, 2H).
13C NMR: (151 MHz, DMSO-d6) δ 172.0, 164.9, 161.1, 146.3, 139.9, 130.9, 129.6, 129.2, 126.8, 120.5, 120.5, 119.9, 117.1, 114.2, 88.4, 77.0, 72.1, 69.2, 68.4, 65.5, 56.9, 54.2, 25.2, 23.6, 21.1.
HRMS (ESI): calc. for C27H34N5O6 [M + H]+: 524.2509, found: 524.2524.
1-(2-(4-((4-(1-((2R,3R,4S,5R)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl)-1H-1,2,3-triazol-4-yl)phenyl)carbamoyl) phenoxy)ethyl)piperidin-1-ium acetate (LS-TX-4): To a vial was added LS-TX-4P (64.7 mg, 99.6 µmol, 1.0 eq), which was dissolved in 4 mL MeOH and 0.5 mL DMF. To the solution was added 0.5 M NaOMe (0.18 mL, 0.09 mmol, 0.9 eq). The solution was stirred at room temperature for 32 min, after which it was quenched with DOWEX 1x2-200 ion-exchange resin. The mixture was filtered and concentrated. The crude material was purified via preparative HPLC using an H2O:MeCN:AcOH solvent system to afford the acetate salt of the desired product as a light yellow solid (35.9 mg, 61.5 µmol, 62%).
1H NMR: (600 MHz, DMSO-d6) δ 10.18 (s, 1H), 8.74 (s, 1H), 8.00–7.90 (m, 2H), 7.90–7.80 (m, 4H), 7.13–7.01 (m, 2H), 5.51 (d, J = 9.2 Hz, 1H), 4.15 (t, J = 5.9 Hz, 2H), 3.86 (dd, J = 11.0, 5.3 Hz, 1H), 3.79 (t, J = 9.1 Hz, 1H), 3.53–3.48 (m, 1H), 3.41 (t, J = 10.4 Hz, 1H), 3.37 (t, J = 8.8 Hz, 1H), 2.68 (t, J = 5.9 Hz, 2H), 2.48–2.38 (m, 4H), 1.87 (s, 3H), 1.50 (quint, J = 5.6 Hz, 4H), 1.42–1.34 (m, 2H). Note: hydroxyl O-H peaks not observed.
13C NMR: (151 MHz, DMSO-d6) δ 172.6, 164.9, 161.2, 146.2, 139.1, 129.6, 126.8, 125.7, 125.5, 120.5, 119.7, 114.1, 88.3, 77.0, 72.2, 69.2, 68.4, 65.9, 57.3, 54.4, 25.6, 23.9, 21.7.
HRMS (ESI): calc. for C27H34N5O6 [M + H]+: 524.2509, found: 524.2528.
N-(2-nitrophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (17): To an oven-dried 50 mL round bottom flask was added 2-nitroaniline (468.6 mg, 3.393 mmol, 1.0 eq), which was dissolved in 10 mL DCM. Triethylamine (1.5 mL, 10.08 mmol, 3.0 eq) was added, followed by a solution of 4-(2-(piperidin-1-yl)ethoxy)benzoyl chloride (1.3677 g, 5.108 mmol, 1.5 eq) in 10 mL DCM. The solution was stirred at room temperature overnight. Upon completion of the reaction, it was quenched with 10 mL AQ K2CO3 and extracted with 100 mL DCM. The organic phase was separated and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 75:24:1 to 28:71:1 Hex:EtOAc:TEA to afford the desired product as a light yellow solid (865.2 mg, 2.342 mmol, 69%).
1H NMR: (600 MHz, CDCl3) δ 11.30 (s, 1H), 9.00 (dd, J = 8.6, 1.4 Hz, 1H), 8.28 (dd, J = 8.5, 1.6 Hz, 1H), 7.99–7.92 (m, 2H), 7.70 (ddd, J = 8.7, 7.2, 1.6 Hz, 1H), 7.20 (ddd, J = 8.5, 7.2, 1.4 Hz, 1H), 7.05–6.99 (m, 2H), 4.19 (t, J = 6.0 Hz, 2H), 2.81 (t, J = 6.0 Hz, 2H), 2.62–2.43 (m, 4H), 1.62 (quint, J = 5.7 Hz, 5H), 1.49–1.42 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 165.3, 162.5, 136.3, 136.2, 135.7, 129.4, 126.2, 125.9, 123.0, 122.1, 114.8, 66.4, 57.8, 55.1, 26.0, 24.2.
HRMS (ESI): calc. for C20H24N3O4 [M + H]+: 370.1762, found: 370.1755.
N-(3-nitrophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (18): To an oven-dried 100 mL round bottom flask was added 3-nitroaniline (469.8 mg, 3.401 mmol, 1.0 eq), which was dissolved in 10 mL DCM. Triethylamine (1.5 mL, 10.08 mmol, 3.0 eq) was added, followed by a solution of 4-(2-(piperidin-1-yl)ethoxy)benzoyl chloride (1.3645 g, 5.096 mmol, 1.5 eq) in 10 mL DCM. The solution was stirred at room temperature overnight. Upon completion of the reaction, it was quenched with 10 mL AQ K2CO3 and extracted with 100 mL DCM. The organic phase was separated and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 79:20:0:1 to 0:99:0:1 to 0:97:2:1 Hex:EtOAc:MeOH:TEA to afford the desired product as a yellow solid (1.1632 g, 3.149 mmol, 93%).
1H NMR: (600 MHz, CDCl3) δ 8.47 (t, J = 2.2 Hz, 1H), 8.14–8.06 (m, 2H), 7.98 (m, 1H), 7.88–7.83 (m, 2H), 7.52 (t, J = 8.2 Hz, 1H), 7.02–6.96 (m, 2H), 4.18 (t, J = 6.0 Hz, 2H), 2.80 (t, J = 6.0 Hz, 2H), 2.59–2.44 (m, 4H), 1.62 (quint, J = 5.6 Hz, 4H), 1.50–1.43 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 165.7, 162.1, 148.5, 139.5, 129.8, 129.2, 126.1, 126.0, 118.7, 115.0, 114.6, 66.2, 57.8, 55.1, 25.9, 24.1.
HRMS (ESI): calc. for C20H24N3O4 [M + H]+: 370.1762, found: 370.1752.
N-(4-nitrophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (19): To an oven-dried 100 mL round bottom flask was added 4-nitroaniline (468.8 mg, 3.394 mmol, 1.0 eq), which was dissolved in 15 mL DCM. Triethylamine (1.5 mL, 10.08 mmol, 3.0 eq) was added, followed by a solution of 4-(2-(piperidin-1-yl)ethoxy)benzoyl chloride (1.3658 g, 5.101 mmol, 1.5 eq) in 10 mL DCM. The solution was stirred at room temperature overnight. After 49 h, it was quenched with 60 mL AQ K2CO3 and extracted with 100 mL DCM. The organic phase was separated and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 85:14:0:1 to 0:99:0:1 to 0:96:3:1 Hex:EtOAc:MeOH:TEA. The resultant material still contained an impurity (likely acid or the ester of the benzoyl chloride), so it was dissolved in 200 mL DCM and washed with 100 mL 5% NaOH. The organic layer was separated and concentrated to afford the desired product as a light brown solid (954.0 mg, 2.582 mmol, 76%).
1H NMR: (600 MHz, CDCl3) δ 8.30–8.22 (m, 2H), 8.00 (s, 1H), 7.89–7.78 (m, 4H), 7.04–6.99 (m, 2H), 4.18 (t, J = 6.0 Hz, 2H), 2.81 (t, J = 6.0 Hz, 2H), 2.59–2.44 (m, 4H), 1.62 (quint, J = 5.6 Hz, 4H), 1.50–1.42 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 165.2, 162.4, 144.0, 143.5, 129.1, 126.0, 125.2, 119.3, 114.8, 66.4, 57.7, 55.2, 25.9, 24.1.
HRMS (ESI): calc. for C20H24N3O4 [M + H]+: 370.1762, found: 370.1752.
N-(2-aminoophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (20): To a 50 mL round bottom flask was added N-(2-nitrophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (823.7 mg, 2.230 mmol, 1.0 eq), which was dissolved in 25 mL MeOH. To the solution was added palladium on charcoal (10 wt.%, 120.6 mg, 12.06 mg Pd, 0.113 mmol Pd, 0.05 eq). The flask headspace was evacuated and filled 3 times with hydrogen and the mixture was stirred under hydrogen at room temperature overnight. Upon completion of the reaction, the mixture was filtered over celite and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 84:15:1 to 0:99:1 Hex:EtOAc:TEA to afford the product as a pale yellow crystalline solid (602.2 mg, 1.774 mmol, 80%).
1H NMR: (600 MHz, CDCl3) δ 7.91–7.83 (m, 2H), 7.74 (s, 1H), 7.31 (m, 1H), 7.09 (td, J = 7.6, 1.5 Hz, 1H), 7.01–6.94 (m, 2H), 6.88–6.81 (m, 2H), 4.17 (t, J = 6.1 Hz, 2H), 3.88 (s, 2H), 2.80 (t, J = 6.0 Hz, 2H), 2.65–2.38 (m, 4H), 1.62 (quint, J = 5.7 Hz, 4H), 1.50–1.41 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 165.3, 161.9, 140.7, 129.1, 127.1, 126.3, 125.2, 124.8, 119.8, 118.4, 114.6, 66.3, 57.8, 55.1, 26.0, 24.2.
HRMS (ESI): calc. for C20H26N3O2 [M + H]+: 340.2020, found: 340.2017.
N-(3-aminophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (21): To a 100 mL round bottom flask was added N-(3-nitrophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (1.0012 g, 2.710 mmol, 1.0 eq), which was dissolved in 55 mL MeOH. To the solution was added palladium on charcoal (10 wt.%, 145.0 mg, 14.5 mg Pd, 0.136 mmol Pd, 0.05 eq). The flask headspace was evacuated and filled 3 times with hydrogen and the mixture was stirred under hydrogen at room temperature overnight. Upon completion of the reaction, the mixture was filtered over celite and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 74:25:0:1 to 0:99:0:1 to 0:94:5:1 Hex:EtOAc:MeOH:TEA to afford the product as a pale orange solid (586.0 mg, 1.742 mmol, 64%).
1H NMR: (600 MHz, CDCl3) δ 7.83–7.77 (m, 2H), 7.72 (s, 1H), 7.30 (t, J = 2.1 Hz, 1H), 7.10 (t, J = 8.0 Hz, 1H), 6.98–6.93 (m, 2H), 6.77 (m, 1H), 6.45 (m, 1H), 4.15 (t, J = 6.0 Hz, 2H), 3.73 (s, 2H), 2.79 (t, J = 6.0 Hz, 2H), 2.60–2.43 (m, 4H), 1.61 (quint, J = 5.6 Hz, 4H), 1.50–1.41 (m, 2H).
13C NMR: (151 MHz, CDCl3) δ 165.2, 161.7, 147.3, 139.2, 129.7, 128.8, 127.3, 114.5, 111.1, 110.0, 106.8, 66.2, 57.8, 55.1, 25.9, 24.2.
HRMS (ESI): calc. for C20H26N3O2 [M + H]+: 340.2020, found: 340.2015.
N-(4-aminophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (22): To a 100 mL round bottom flask was added N-(4-nitrophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (895.7 mg, 2.425 mmol, 1.0 eq), which was dissolved in 55 mL MeOH. To the solution was added palladium on charcoal (10 wt.%, 131.7 mg, 13.2 mg Pd, 0.123 mmol Pd, 0.05 eq). The flask headspace was evacuated and filled 3 times with hydrogen and the mixture was stirred under hydrogen at room temperature overnight. Upon completion of the reaction, the mixture was filtered over celite and concentrated. The crude material was purified via automated flash column chromatography using a gradient of 49:50:0:1 to 0:99:0:1 to 0:94:5:1 Hex:EtOAc:MeOH:TEA. Despite multiple attempts at purification, the product was unable to be separated from residual starting material. Crude yellow solid (530.1 mg) taken directly to next steps.
1H NMR: (600 MHz, CDCl3) δ 7.84–7.76 (m, 2H), 7.64 (s, 1H), 7.42–7.34 (m, 2H), 6.97–6.92 (m, 2H), 6.71–6.65 (m, 2H), 4.18 (t, J = 6.0 Hz, 2H), 3.63 (s, 2H), 2.82 (t, J = 5.9 Hz, 2H), 2.63–2.47 (m, 4H), 1.64 (quint, J = 5.7 Hz, 4H), 1.50–1.43 (m, 2H).
HRMS (ESI): calc. for C20H26N3O2 [M + H]+: 340.2020, found: 340.2013.
(3aR,5aR,8aR,8bS)-2,2,7,7-tetramethyl-N-(2-(4-(2-(piperidin-1-yl)ethoxy)benzamido)phenyl)tetrahydro-3aH-bis([1,3]dioxolo)[4,5-b:4′,5′-d]pyran-3a-carboxamide (LS-AF-2P): To an oven-dried vial was added 2,3;4,5-di-O-isopropylidene-2-oxo-D-glucuronic acid (97.7 mg, 0.356 mmol, 1.0 eq), which was dissolved in 4 mL DCM. The solution was cooled to 0 °C and N-methyl imidazole (0.07 mL, 0.878 mmol, 2.5 eq) was added. The solution was stirred for 10 min, after which a solution of methanesulfonyl chloride (0.03 mL, 0.388 mmol, 1.1 eq) in 1 mL DCM was added. The solution was stirred at 0 °C for 30 min. To the solution was then added a solution of N-(2-aminoophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (120.2 mg, 0.354 mmol, 1.0 eq) in 5 mL DCM. The solution was stirred overnight and allowed to slowly warm to room temperature. After 23 h, the reaction was quenched with 25 mL ice-cold H2O and extracted with 2 × 40 mL portions of DCM. The organic layers were combined and concentrated. The crude material was twice purified via automated flash column chromatography, first using a gradient of 100:0 to 90:10 DCM:MeOH, then 74:25:1 to 0:99:1 Hex:EtOAc:TEA to afford the desired product as a red residue (104.5 mg, 0.175 mmol, 49%).
1H NMR: (600 MHz, CDCl3) δ 8.92 (s, 1H), 8.84 (s, 1H), 8.03 (m, 1H), 7.93–7.88 (m, 2H), 7.34 (ddd, J = 8.5, 6.1, 2.8 Hz, 1H), 7.20–7.14 (m, 2H), 6.94 (d, J = 12.5 Hz, 2H), 4.85 (d, J = 2.6 Hz, 1H), 4.65 (dd, J = 7.9, 2.6 Hz, 1H), 4.30–4.25 (m, 1H), 4.16 (t, J = 6.1 Hz, 2H), 4.00 (dd, J = 12.9, 1.8 Hz, 1H), 3.93 (d, J = 13.0 Hz, 1H), 2.80 (t, J = 6.0 Hz, 2H), 2.61–2.42 (m, 4H), 1.64–1.60 (m, 4H), 1.59 (s, 3H), 1.59 (s, 3H), 1.49–1.41 (m, 2H), 1.29 (s, 3H), 1.24 (s, 3H).
13C NMR: (151 MHz, CDCl3) δ 167.7, 164.9, 161.6, 132.4, 129.4, 127.9, 127.4, 126.8, 125.9, 125.3, 124.6, 114.2, 110.9, 109.2, 99.5, 72.7, 70.2, 69.9, 66.1, 62.0, 57.8, 55.1, 26.3, 25.9, 25.9, 24.8, 24.2, 23.9.
HRMS (ESI): calc. for C32H42N3O8 [M + H]+: 596.2972, found: 596.2980.
(3aR,5aR,8aR,8bS)-2,2,7,7-tetramethyl-N-(3-(4-(2-(piperidin-1-yl)ethoxy)benzamido)phenyl)tetrahydro-3aH-bis([1,3]dioxolo)[4,5-b:4′,5′-d]pyran-3a-carboxamide (LS-AF-3P): To an oven-dried vial was added 2,3;4,5-di-O-isopropylidene-2-oxo-D-glucuronic acid (96.0 mg, 0.350 mmol, 1.0 eq), which was dissolved in 4 mL DCM. The solution was cooled to 0 °C and N-methyl imidazole (0.07 mL, 0.878 mmol, 2.5 eq) was added. The solution was stirred for 10 min, after which a solution of methanesulfonyl chloride (0.03 mL, 0.388 mmol, 1.1 eq) in 1 mL DCM was added. The solution was stirred at 0 °C for 30 min. To the solution was then added a solution of N-(3-aminoophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (119.8 mg, 0.353 mmol, 1.0 eq) in 5 mL DCM. The solution was stirred overnight and allowed to slowly warm to room temperature. Upon completion, the reaction was quenched with 25 mL ice-cold H2O and extracted with 2 × 40 mL portions of DCM. The organic layers were combined and concentrated. The crude material was twice purified via automated flash column chromatography, first using a gradient of 69:30:0:1 to 0:99:0:1 to 0:89:10:1 Hex:EtOAc:MeOH:TEA, then 100:0 to 90:10 DCM:MeOH to afford the desired product as a red residue (114.0 mg, 0.191 mmol, 55%).
1H NMR: (600 MHz, CDCl3) δ 8.71 (s, 1H), 8.01 (t, J = 2.1 Hz, 1H), 7.85–7.80 (m, 2H), 7.79 (s, 1H), 7.60 (m, 1H), 7.32 (t, J = 8.1 Hz, 1H), 7.24 (m, 1H), 7.01–6.95 (m, 2H), 4.75 (d, J = 2.6 Hz, 1H), 4.65 (dd, J = 7.9, 2.5 Hz, 1H), 4.29 (d, J = 8.0 Hz, 1H), 4.27–4.23 (m, 2H), 4.02 (dd, J = 12.9, 1.8 Hz, 1H), 3.96 (dd, J = 12.9, 0.9 Hz, 1H), 3.00–2.87 (m, 2H), 2.82–2.48 (m, 4H), 1.75–1.68 (m, 4H), 1.60 (s, 3H), 1.59 (s, 3H), 1.54–1.47 (m, 2H), 1.41 (s, 3H), 1.33 (s, 3H).
13C NMR: (151 MHz, CDCl3) δ 166.2, 165.1, 161.4, 138.9, 137.7, 129.7, 129.0, 127.2, 116.3, 115.3, 114.6, 111.2, 110.8, 109.1, 99.7, 72.9, 70.2, 69.9, 65.5, 61.8, 57.4, 54.9, 26.3, 26.1, 25.2, 24.8, 23.8, 23.7.
HRMS (ESI): calc. for C32H42N3O8 [M + H]+: 596.2972, found: 596.2975.
1-(2-(4-((4-((3aR,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-5H-bis([1,3]dioxolo)[4,5-b:4′,5′-d]pyran-3a-carboxamido)phenyl)carbamoyl)phenoxy)ethyl)piperidin-1-ium acetate (LS-AF-4P): To an oven-dried vial was added 2,3;4,5-di-O-isopropylidene-2-oxo-D-glucuronic acid (97.1 mg, 0.354 mmol, 1.0 eq), which was dissolved in 4 mL DCM. The solution was cooled to 0 °C and N-methyl imidazole (0.07 mL, 0.878 mmol, 2.5 eq) was added. The solution was stirred for 10 min, after which a solution of methanesulfonyl chloride (0.03 mL, 0.388 mmol, 1.1 eq) in 1 mL DCM was added. The solution was stirred at 0 °C for 35 min. To the solution was then added a solution of N-(4-aminoophenyl)-4-(2-(piperidin-1-yl)ethoxy)benzamide (119.4 mg, 0.352 mmol, 1.0 eq) in 5 mL DCM and 0.5 mL anhydrous DMF. The solution was stirred overnight and allowed to slowly warm to room temperature. Upon completion, the reaction was quenched with 25 mL ice-cold H2O and extracted with 2 × 50 mL portions of DCM. The organic layers were combined and concentrated. The crude material was purified via preparative HPLC using an H2O:MeCN:AcOH gradient to afford the acetate salt of the desired product as a white solid (27.1 mg, 41.3 µmol, 12%).
1H NMR: (600 MHz, DMSO-d6) δ 10.05 (s, 1H), 9.71 (s, 1H), 7.96–7.91 (m, 2H), 7.70–7.67 (m, 2H), 7.67–7.62 (m, 2H), 7.07–7.04 (m, 2H), 4.69 (d, J = 2.5 Hz, 1H), 4.66 (dd, J = 7.9, 2.6 Hz, 1H), 4.32 (dd, J = 7.9, 1.4 Hz, 1H), 4.14 (t, J = 5.9 Hz, 2H), 3.91–3.83 (m, 2H, os), 2.67 (t, J = 5.9 Hz, 2H), 2.48–2.38 (m, 4H), 1.88 (s, 3H), 1.52 (s, 3H), 1.49 (quint, J = 5.6 Hz, 4H), 1.46 (s, 3H), 1.42–1.35 (m, 2H), 1.30 (s, 3H), 1.27 (s, 3H).
13C NMR: (151 MHz, DMSO-d6) δ 172.2, 165.8, 164.6, 161.1, 135.5, 133.5, 129.5, 126.8, 120.6, 120.5, 114.1, 109.6, 108.3, 99.4, 72.0, 69.7, 69.3, 65.9, 61.3, 57.3, 54.4, 26.0, 25.8, 25.6, 24.7, 24.1, 23.9, 21.4.
HRMS (ESI): calc. for C32H42N3O8 [M + H]+: 596.2972, found: 596.2970.