Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequencing data

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

Unifies the presentation of taxonomic classifiers output

Mumemto: multi-MUM and MEM finding across pangenomes

KaryoScope: rapid, alignment-free sequence annotation for the pangenome era

Registry of pre-built KaryoScope databases available for download

faster preparing the input data and easier running MCScanX

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

Alignment-Free Taxonomic Classification Deep Learning Model

napari: a fast, interactive, multi-dimensional image viewer for python

Fast Whole-Genome Similarity (ANI) Estimation

Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

A tool for drawing ANI clustermap between all-vs-all microbial genomes

A multiscale pangenome browser

Plot ideogams and simple gene tracks with matplotlib

Functional annotation of genomics data for funannotate2

a small build system with a focus on speed

Phyling: phylogenetic inference from annotated genomes

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

Bioinformatics software package for increasing the accuracy of nanopore sequencing data.

UFCG: Universal Fungal Core Genes

Robust identification of orthologous Synteny with the Orthology Index

FastOMA is a scalable software package to infer orthology relationship.

Header-only TOML config file parser and serializer for C++17.

Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome

This repository contains the pipeline for assessing telomere length from "Chromosome specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing"

Method to optimally select samples for validation and resequencing