Stars
software tools for haplotype assembly from sequence data
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Polarbear translates between different single-cell data modalities
Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
displays multiple genomic sequences in the form of a tube map
Curated academic CV templates and guidelines for PhD students, researchers, and faculty job applicants.
Causal Discovery in Python. Learning causality from data.
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
Fast genome and metagenome distance estimation using MinHash
CLIP (Contrastive Language-Image Pretraining), Predict the most relevant text snippet given an image
Repository to host and maintain SCALE-Sim code
A modular RL library to fine-tune language models to human preferences
An integrated cache and memory access time, cycle time, area, leakage, and dynamic power model
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.
An online version of Secret Hitler, a social deduction board game.
MinHash, LSH, LSH Forest, Weighted MinHash, HyperLogLog, HyperLogLog++, LSH Ensemble and HNSW
A library for efficient similarity search and clustering of dense vectors.
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important appl…
Code for the paper "Putting a bug in ML: The moth olfactory network learns to read MNIST", by CB Delahunt and JN Kutz