PhD Student · Chinese Academy of Medical Sciences & Peking Union Medical College
Developing computational methods and AI systems for tumor microenvironment analysis, multi-omics integration, and biomedical knowledge discovery.
| Repository | Journal | Description |
|---|---|---|
| MOFS | Nature Communications | Multimodality Fusion Subtyping |
| IRLS | Nature Communications | Immune-Related lncRNA Signature |
| GINS | eLife | Gene Interaction Perturbation Network |
| AIDPS | eLife | AI-Derived Prognostic Signature |
| TimeCCI | Cell Reports | Temporal Cell-Cell Interaction |
| SurvivalML | Cancer Letters | ML Prognostic Modeling |
AI for Science
ScienceClaw · PubMedRAG · LitChain · GeneRAG · Aividence · BioKG-Builder · llmflow
Single-cell & Spatial Omics
NewCCI · scMetaLink · SVG
Biomarker & Utilities
BioEnricher · ggforge · EasyDNB · SafeMapper · OpenTargetsR · TIME
30+ repositories with substantial modifications:
Cell-Cell Communication: liana · SpaTalk · nichenetr · multinichenetr · iTALK · Connectome · COMMOT · Chunk
Single-Cell Analysis: CellOracle · scGate · SCENT · scTenifoldKnk · scPAS · recall · scimilarity · SAMap
Spatial Transcriptomics: STRIDE · SpaGE · cytospace · fastCNV
CNV & Metabolism: SCEVAN · METAFlux · MAGIC
Trajectory & Dynamics: tradeSeq · Cepo · Refate
Multi-omics: LRAcluster · RGCCA · genekitr2 · GSReg · ssgsea.GBM.classification
Others: OmnipathR · MultiK · SecAct