Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

Flapjack is a multi-platform application providing interactive visualizations of high-throughput genotype data, allowing for rapid navigation and comparisons between lines, markers and chromosomes.

BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.

UCSC Genome Browser source. "beta" is released version / "master" is testing.

Whole Genome Alignment Tools

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

Tools for improving the sensitivity and specificity of genome alignments

Portable solution to generate genome alignment chains using lastz

Scripts used on the UFZ Galaxy server

Taskwarrior - Command line Task Management

An ensemble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired reads, and settle reads interleaving.

A shell script to pretty print tabular data into the terminal

An Ansible role for managing a Galaxy server